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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 813 fasta sequence
[CGGCACGAGGGANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCGTATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGATTTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCATAAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAAGATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCATACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA]
[+] EMBL CD081595 [CGGCACGAGGGANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCGTATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGATTTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCATAAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAAGATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCATACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA]
[-] EMBL CD152448 [ CAAATCAACTTAATATCTAATCCAACCCTAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCACTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCG TTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTT ]
consensusID : consensus_6921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence
[TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTCAACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCGAGCTGCTAGGAGCGTATATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGC]
[+] EMBL CD083705 [TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTCAACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCGAGCTGCTAGGAGCGTATATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGC]
[-] EMBL CD169651 [ attttggGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAA CCCCCCCTACCATTGATCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6921#0 ------------------------------------------------------------
consensus_6921#1 TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTC 60
consensus_6921#0 --CGGCACGAGG------GANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCG 52
consensus_6921#1 AACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCG-AGCTGCTA--GGAGCG 117
** ** ** * * ******************* ******** ******
consensus_6921#0 TATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAA 112
consensus_6921#1 TATA-TGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAA 176
**** *******************************************************
consensus_6921#0 AGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTA 172
consensus_6921#1 AGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTA 236
************************************************************
consensus_6921#0 GTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTT 232
consensus_6921#1 GTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTT 296
************************************************************
consensus_6921#0 TAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACC 292
consensus_6921#1 TAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACC 356
************************************************************
consensus_6921#0 ACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTT 352
consensus_6921#1 ACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTT 416
************************************************************
consensus_6921#0 TTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTG 412
consensus_6921#1 TTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTG 476
************************************************************
consensus_6921#0 ATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATA 472
consensus_6921#1 ATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATA 536
************************************************************
consensus_6921#0 GTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACA 532
consensus_6921#1 GTTACCTCATCACGC--------------------------------------------- 551
***************
consensus_6921#0 CAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGAT 592
consensus_6921#1 ------------------------------------------------------------
consensus_6921#0 TTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCAT 652
consensus_6921#1 ------------------------------------------------------------
consensus_6921#0 AAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAA 712
consensus_6921#1 ------------------------------------------------------------
consensus_6921#0 GATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCAT 772
consensus_6921#1 ------------------------------------------------------------
consensus_6921#0 ACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA 813
consensus_6921#1 -----------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||