These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTTAGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTATTTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTTTTTCGCATT] [+] EMBL CD081671 [CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTTAGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTATTTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTTTTTCGCATT] consensusID : consensus_6922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 508 fasta sequence [TAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT--GGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTC--GCCGATTCTGGCC] [-] EMBL CD201450 [TAACACTTCCTACTGCAGTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACACTACAAAACTTTCTCTTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCTACTGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAAgcg ] [-] EMBL CD084148 [ ATTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT GGAATTATAAGGAC TGTCCGAACATTGTAACAAG CCTGC AATCAACCTC GCCGATTCT ] [-] EMBL CD084096 [ TTACAAAACTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGTTCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCGTGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATCCTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTGATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATCTAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATTCACTCT GGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTCGTGCCGA TCTGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6922#0 CCAGGATTATAAGTGCAATGTAGAATATGAAACATACAAATAAATCCAAAACAATGTGTT 60 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 AGAGCTAATGTTTAAGGATTGAAATATATTTACAAGTGATCGTAATATTACGAGGGTTAT 120 consensus_6922#1 ------------------------------------------------------------ consensus_6922#0 TTAAGCGACCCATTTCATACATCGTGTATCTGAATGTATTATATAACACTTCCTACTGCA 180 consensus_6922#1 -------------------------------------------TAACACTTCCTACTGCA 17 ***************** consensus_6922#0 GTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAA 240 consensus_6922#1 GTATGGTAGACCACAAACTATACAGTTATATAGACCTTGAAAACCACAGACATTACAAAA 77 ************************************************************ consensus_6922#0 CTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGT 300 consensus_6922#1 CTTTCTCCTAGGTAGCCTGCTCGGAGGAACGGCAGCCGTAAAATAGCAGGCACCAGTAGT 137 ************************************************************ consensus_6922#0 TCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCG 360 consensus_6922#1 TCCTCCTTTGGTTGCTTGATATTCTTCATCCAGTAAAATCTCGAACGTTTTCCTACAGCG 197 ************************************************************ consensus_6922#0 TGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATC 420 consensus_6922#1 TGCACGAATATTCGATATGCGTTTCTTTTTTCGGCGCTTATTGTTAGCTGAAACATCATC 257 ************************************************************ consensus_6922#0 CTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTG 480 consensus_6922#1 CTCATCTCCAAATTGTGGTCTCTTCGTTCCCTTCACATCTGAGTGGGGTTCTTCAATGTG 317 ************************************************************ consensus_6922#0 ATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATC 540 consensus_6922#1 ATTATCTTGTTCCAGCAAGCTAAGAGTTTTTCTCTGTCTCCTTTCTTTAGCTGCATCATC 377 ************************************************************ consensus_6922#0 TAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATT 600 consensus_6922#1 TAAAGGACGTCTAGTAGCCTCACGCAAAAGTTCGCGTTTTTCCATATCATTAGATGTATT 437 ************************************************************ consensus_6922#0 CACTCTAC--TTTTTCGCATT--------------------------------------- 619 consensus_6922#1 CACTCTGGGATTATAAGGACTTGTCCGAACATTGTAACAAGCCCTGCAAATCAACCTCGC 497 ****** ** * * * * consensus_6922#0 ----------- consensus_6922#1 CGATTCTGGCC 508 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||