cluster # 6925

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Schistosoma mansoni
cluster # 6925 cluster # 6925 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6925#0 length = 1092 sequences # 3

consensus_6925#1 length = 422 sequences # 1

consensusID : consensus_6925#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1092
fasta sequence

                              [CCCCAGGCACGGGTACTTCAACTTCGCGATGAGCTTCAGACTACCAAGGGACTTCCCAAGGTTCAGTCATCTCTTTTGCAAAATACTAGTGAAATCTCAAATTATAAAGCGTCAAGCTCAGATGGTTCAACTGGTTTTGACGGTCAGTTTACACTAGTAAACACTTTACTGATCTCAGTTTGCGGAAATTGTCGTGTTATGGCATCGTGTGACTATTTAAATACCTTGTGTGTTTCACAGTCTTCAACTAATCCAATATTTCGAGGATTTGGAATACGTAAGGTGAATAGTTCTGAACAAAGATTAATAAAACATGTACA-CTTGCATACACAACCGATCCGTGACTTGGCATTTCATCCAGAAGCTCATGATGGTATTATTGCAAGCGCAAGCTTAGATAAAACTTTACGTCTCACTAGTTTATTAAATGATTCAATTGTTCAAACTTACCATTGTCCAGTGGGAATATGGAGTTGTTGTTGGGCTGGAGATTCGAATCGTTTATTCGCTGGCTGTGCAAATGGTTCAATTATGTTATATGATATACGTGTGACTACCGGTCCAATAGATGTTTTCTATGTACCAAATAACGATGCACCGGTCTTGGGATTGCAGTATTTATCACCTGCTGTGGATCAAAATATTTCCAGTGCTGGAGGTTTATTAGTCGGTCAGTTGAATAAAGTCACATTTATGTCTGAGAGTCCTGAAAATCCTATAGCTATACAGCAAACAACTAACCAAGAACGAATAGAATCTGCTGATGGCATTGCTTCAACTGATGATTCAGAAAATCCTGCTTCGCCTGATATTCTTCAAGATAATAGCACGCTTCGTCCATCGAATTGGCTAGGAAATATACCTTCTTATAAACCCCATAATCTTCCTCTAGAAGGCAGTTTAGTTTCATTAAGTGCACTTCCACAAGGACGTCAGTTTTTAGCCTCCTACAGACCATCCCAACGATTACCTCGTGTAAGACATTTGTTGGCAGAATTACAATCTGAAACCTCACCTGTAGCAGAAACGGCTTACTCCTGTAGAGAAATACACAATCTTTGGGCAGGAAATCGGATGAANAAGCTGACTCGT]

[-] EMBL CD138714             [CCCCAGGCACGGGTACTTCAACTTCGCGATGAGCTTCAGACTACCAAGGGACTTCCCAAGGTTCAGTCATCTCTTTTGCAAAATACTAGTGAAATCTCAAATTATAAAGCGTCAAGCTCAGATGGTTCAACTGGTTTTGACGGTCAGTTTACACTAGTAAACACTTTACTGATCTCAGTTTGCGGAAATTGTCGTGTTATGGCATCGTGTGACTATTTAAATACCTTGTGTGTTTCACAGTCTTCAACTAATCCAATATTTCGAGGATTTGGAATACGTAAGGTGAATAGTTCTGAACAAAGATTAATAAAACATGTACA CTTGCATACACAACCGATCCGTGACTTGGCATTTCATCCAGAAGCTCATGATGGTATTATTGCAAGCGCAAGCTTAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD081822             [                                                                                                                                                                                                                                                                                                                         gTGTACANCTTGCATACACAACCGATCCGTGACTTGGCATTTCATCCAGAAGCTCATGATGGTATTATTGCAAGCGCAAGCTTAGATAAAACTTTACGTCTCACTAGTTTATTAAATGATTCAATTGTTCAAACTTACCATTGTCCAGTGGGAATATGGAGTTGTTGTTGGGCTGGAGATTCGAATCGTTTATTCGCTGGCTGTGCAAATGGTTCAATTATGTTATATGATATACGTGTGACTACCGGTCCAATAGATGTTTTCTATGTACCAAATAACGATGCACCGGTCTTGGGATTGCAGTATTTATCACCTGCTGTGGATCAAAATATTTCCAGTGCTGGAGGTTTATTAGTCGGTCAGTTGAATAAAGTCACATTTATGTCTGAGAGTCCTGAAAATCCTATAGCTATACAGCAAACAACTAACCAAGAACGAATAGAATCTGCTGATGGCATTGCTTCAACTGATGATTCAGAAAATCCTGCTTCGCCTGATATTCTTCAAGATAATAGCACGCTTCGTCCATCGAATTGGCTAGGAAATATACCTTCTTATAAACCCCATAATCTTCCTCTAGAAGGCAGTTTAGTTTCATTAAGTGCACTTCCACAAGGACGTCAGTTTTTAGCCTCCTACAGACCATCCCAACGATTACCTCGTGTAAGACATTTGT                                                                                                        ]
[+] EMBL CD116271             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGTTATATGATATACGTGTGACTACCGGTCCAATAGATGTTTTCTATGTACCAAATAACGATGCACCGGTCTTGGGATTGCAGTATTTATCACCTGCTGTGGATCAAAATATTTCCAGTGCTGGAGGTTTATTAGTCGGTCAGTTGAATAAAGTCACATTTATGTCTGAGAGTCCTGAAAATCCTATAGCTATACAGCAAACAACTAACCAAGAACGAATAGAATCTGCTGATGGCATTGCTTCAACTGATGATTCAGAAAATCCTGCTTCGCCTGATATTCTTCAAGATAATAGCACGCTTCGTCCATCGAATTGGCTAGGAAATATACCTTCTTATAAACCCCATAATCTTCCTCTAGAAGGCAGTTTAGTTTCATTAAGTGCACTTCCACAAGGACGTCAGTTTTTAGCCTCCTACAGACCATCCCAACGATTACCTCGTGTAAGACATTTGTTGGCAGAATTACAATCTGAAACCTCACCTGTAGCAGAAACGGCTTACTCCTGTAGAGAAATACACAATCTTTGGGCAGGAAATCGGATGAANAAGCTGACTCGT]




>consensus_6925#0
CCCCAGGCACGGGTACTTCAACTTCGCGATGAGCTTCAGACTACCAAGGGACTTCCCAAG
GTTCAGTCATCTCTTTTGCAAAATACTAGTGAAATCTCAAATTATAAAGCGTCAAGCTCA
GATGGTTCAACTGGTTTTGACGGTCAGTTTACACTAGTAAACACTTTACTGATCTCAGTT
TGCGGAAATTGTCGTGTTATGGCATCGTGTGACTATTTAAATACCTTGTGTGTTTCACAG
TCTTCAACTAATCCAATATTTCGAGGATTTGGAATACGTAAGGTGAATAGTTCTGAACAA
AGATTAATAAAACATGTACACTTGCATACACAACCGATCCGTGACTTGGCATTTCATCCA
GAAGCTCATGATGGTATTATTGCAAGCGCAAGCTTAGATAAAACTTTACGTCTCACTAGT
TTATTAAATGATTCAATTGTTCAAACTTACCATTGTCCAGTGGGAATATGGAGTTGTTGT
TGGGCTGGAGATTCGAATCGTTTATTCGCTGGCTGTGCAAATGGTTCAATTATGTTATAT
GATATACGTGTGACTACCGGTCCAATAGATGTTTTCTATGTACCAAATAACGATGCACCG
GTCTTGGGATTGCAGTATTTATCACCTGCTGTGGATCAAAATATTTCCAGTGCTGGAGGT
TTATTAGTCGGTCAGTTGAATAAAGTCACATTTATGTCTGAGAGTCCTGAAAATCCTATA
GCTATACAGCAAACAACTAACCAAGAACGAATAGAATCTGCTGATGGCATTGCTTCAACT
GATGATTCAGAAAATCCTGCTTCGCCTGATATTCTTCAAGATAATAGCACGCTTCGTCCA
TCGAATTGGCTAGGAAATATACCTTCTTATAAACCCCATAATCTTCCTCTAGAAGGCAGT
TTAGTTTCATTAAGTGCACTTCCACAAGGACGTCAGTTTTTAGCCTCCTACAGACCATCC
CAACGATTACCTCGTGTAAGACATTTGTTGGCAGAATTACAATCTGAAACCTCACCTGTA
GCAGAAACGGCTTACTCCTGTAGAGAAATACACAATCTTTGGGCAGGAAATCGGATGAAN
AAGCTGACTCGT

consensusID : consensus_6925#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CATTGTGATCAAAACATGAACTATGGGCAGACTATAACTTATGCGCAAACTAATCAGATTCAAGATAACAGGTCTTGGGTTTCGGCGCGAATTTCATTCATCTATTTGTCATCGCTAGTGTAAGTTCGTCATAAAAACCCTAACGCCCAGATGTAAATCTTAATCCTGATTCCTCAAGCTAATTTATCACCCATCAAGTGCGTGGACACTCAAGGTCAACGTAGCGTTGCTCAAGGATTATCCATAAATTATTGTCCAACCGAGACCATAAAGTGACAAGATTATCTGAGCCTAAAAAACGCACTAGAAGACAACGGTCAAATTAAGGTAATAGGTTCAATAATTCAAGAATTCCGGACTAAATCGACTTGCCTTGACGCTTTATAATTTGAGATTTCACTAGTATTTTGCGAAAGAGATGA]

[+] EMBL CD197523             [CATTGTGATCAAAACATGAACTATGGGCAGACTATAACTTATGCGCAAACTAATCAGATTCAAGATAACAGGTCTTGGGTTTCGGCGCGAATTTCATTCATCTATTTGTCATCGCTAGTGTAAGTTCGTCATAAAAACCCTAACGCCCAGATGTAAATCTTAATCCTGATTCCTCAAGCTAATTTATCACCCATCAAGTGCGTGGACACTCAAGGTCAACGTAGCGTTGCTCAAGGATTATCCATAAATTATTGTCCAACCGAGACCATAAAGTGACAAGATTATCTGAGCCTAAAAAACGCACTAGAAGACAACGGTCAAATTAAGGTAATAGGTTCAATAATTCAAGAATTCCGGACTAAATCGACTTGCCTTGACGCTTTATAATTTGAGATTTCACTAGTATTTTGCGAAAGAGATGA]




>consensus_6925#1
CATTGTGATCAAAACATGAACTATGGGCAGACTATAACTTATGCGCAAACTAATCAGATT
CAAGATAACAGGTCTTGGGTTTCGGCGCGAATTTCATTCATCTATTTGTCATCGCTAGTG
TAAGTTCGTCATAAAAACCCTAACGCCCAGATGTAAATCTTAATCCTGATTCCTCAAGCT
AATTTATCACCCATCAAGTGCGTGGACACTCAAGGTCAACGTAGCGTTGCTCAAGGATTA
TCCATAAATTATTGTCCAACCGAGACCATAAAGTGACAAGATTATCTGAGCCTAAAAAAC
GCACTAGAAGACAACGGTCAAATTAAGGTAATAGGTTCAATAATTCAAGAATTCCGGACT
AAATCGACTTGCCTTGACGCTTTATAATTTGAGATTTCACTAGTATTTTGCGAAAGAGAT
GA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6925#0      CCCCAGGCACGGGTACTTCAACTTCGCGATGAGCTTCAGACTACCAAGGGACTTCCCAAG 60
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      GTTCAGTCATCTCTTTTGCAAAATACTAGTGAAATCTCAAATTATAAAGCGTCAAGCTCA 120
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      GATGGTTCAACTGGTTTTGACGGTCAGTTTACACTAGTAAACACTTTACTGATCTCAGTT 180
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      TGCGGAAATTGTCGTGTTATGGCATCGTGTGACTATTTAAATACCTTGTGTGTTTCACAG 240
consensus_6925#1      -------------------------------------------------------CATTG 5
                                                                             **  *

consensus_6925#0      TCTTCAACTAATCCAATATTTCGAGGATTTGGAATACGTAAGGTGAATAGTTCTGAACAA 300
consensus_6925#1      TGATCAAAACATGAACTATGGGCAGACTATAACTTATGC---GCAAACTAATCAGATTCA 62
                      *  ****   **  * ***    **  * *    ** *    *  **    ** **   *

consensus_6925#0      AGATTAATAAAACATGTACACTTGCATACACAACCGATCCGTGACTTGGCATTTCATCCA 360
consensus_6925#1      AGAT-AACAGGTCTTGGGTTTCGGCGCGAATT-TCATTCATCTATTTGTCATCGCTAGTG 120
                      **** ** *   * **       **    *    *  **    * *** ***  *     

consensus_6925#0      GAAGCTCATGATGGTATTATTGCAAGCGCAAGCTTAGATAAAACTTTACGTCTCACTAGT 420
consensus_6925#1      TAAGTTCGTCATAAAAACCCTA-ACGCCCAGATGTAAATCTTAATCCTGATTCCTCAAGC 179
                       *** ** * **   *    *  * ** **    ** **   * *     *  * * ** 

consensus_6925#0      TTATTAAATGATTCAATTGTTCAAACTTACCATTGTCCAGTGGGAATATGGAGTTGTTGT 480
consensus_6925#1      TAATTTA-TCACCCA-----TCAAGTGCGTGGACACTCAAGGTCAACGTAGCGTTGCTCA 233
                      * *** * * *  **     ****             **  *  **  * * **** *  

consensus_6925#0      TGGGCTGGAGATTCGAATCGTTTATTCGCTGGCTGTGCAAATGGTTCAATTATGTTATAT 540
consensus_6925#1      AGGATT----ATCC--ATAAATTATTGTCCAACCGAGACCATAAAGTGACAAGATTATCT 287
                       **  *    ** *  **   *****  *   * * *   **      *  *  **** *

consensus_6925#0      GATATACGTGTGACTACCGGTCCAATAGATGTTTTCTATGTACCAAATAAC-GATGCACC 599
consensus_6925#1      GA-----GCCTAAAAAACGCACTAGAAGACAACGGTCAAAT-TAAGGTAATAGGTTCAAT 341
                      **     *  * *  * **  * *  ***        *  *   *  ***  * * **  

consensus_6925#0      GGTCTTGGGATTGCAGTATTTATC-ACCTGCTGTGGATCAAAATATTTCCAGTGCTGGAG 658
consensus_6925#1      AATTCAAGAATTCCGGACTAAATCGACTTGCCTTGACGCTTTATAATTTGAGATTTCACT 401
                        *    * *** * *  *  *** ** ***  **   *   *** **  **   *    

consensus_6925#0      GTTTATTAGTCGGTCAGTTGAATAAAGTCACATTTATGTCTGAGAGTCCTGAAAATCCTA 718
consensus_6925#1      AGTATTTTGCGAAAGAGATGA--------------------------------------- 422
                        *  ** *      ** ***                                       

consensus_6925#0      TAGCTATACAGCAAACAACTAACCAAGAACGAATAGAATCTGCTGATGGCATTGCTTCAA 778
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      CTGATGATTCAGAAAATCCTGCTTCGCCTGATATTCTTCAAGATAATAGCACGCTTCGTC 838
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      CATCGAATTGGCTAGGAAATATACCTTCTTATAAACCCCATAATCTTCCTCTAGAAGGCA 898
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      GTTTAGTTTCATTAAGTGCACTTCCACAAGGACGTCAGTTTTTAGCCTCCTACAGACCAT 958
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      CCCAACGATTACCTCGTGTAAGACATTTGTTGGCAGAATTACAATCTGAAACCTCACCTG 1018
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      TAGCAGAAACGGCTTACTCCTGTAGAGAAATACACAATCTTTGGGCAGGAAATCGGATGA 1078
consensus_6925#1      ------------------------------------------------------------
                                                                                  

consensus_6925#0      ANAAGCTGACTCGT 1092
consensus_6925#1      --------------