cluster # 6933

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Schistosoma mansoni
cluster # 6933 cluster # 6933 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6933#0 length = 640 sequences # 2

consensus_6933#1 length = 613 sequences # 1
consensus_6933#2 length = 231 sequences # 1

consensusID : consensus_6933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence

                              [AGAAAAATCAAGAGTGGTTCTTTTACCAATTGATGGAAGTGAACATGCTGAACGAGCATTTCAATGGTATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATATATTCATTCCTATGTNNNANANNNTTTCGAAGGATGTTATAATAA]

[+] EMBL CD082511             [AGAAAAATCAAGAGTGGTTCTTTTACCAATTGATGGAAGTGAACATGCTGAACGAGCATTTCAATGGTATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATATATTCATTCCTATGTNNNANANNN                     ]
[+] EMBL AI021772             [                                                                                                                                                                                                                                                                                                                                                          ATTATTATGGGAAGTAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATACAACATTTTTTTATCATAAAACACTGATTTCATTGTT AAAAAAGACAGTGTAATATATTCATTCCTATGTATCTGTTTCTTTCGAAGGATGTTATAATAA]




>consensus_6933#0
AGAAAAATCAAGAGTGGTTCTTTTACCAATTGATGGAAGTGAACATGCTGAACGAGCATT
TCAATGGTATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGT
TGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGA
TATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATATAT
AGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACC
TGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGAAG
TAGAGGTCTTGGTATACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATTACA
TCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTGATCA
TATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATTATAC
AACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATATATTC
ATTCCTATGTNNNANANNNTTTCGAAGGATGTTATAATAA

consensusID : consensus_6933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [TACCAATTGGATGGAAGTGAACATGCTGAACGAGCATTTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGAAGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATTACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGGANCATNTTTACTCTTTAANTTAAAAATNTGTNCCANTTAAGTTNTTTTTGGGCATAATATTCAACATTTNTTNNTCATAAACACGATTCATGGTAAAAAGGCAGGGTATNTTTCANCCCATGTANCTGNTCCTTCGAGGATTTTTATAAAGGTGGT]

[+] EMBL SM939                [TACCAATTGGATGGAAGTGAACATGCTGAACGAGCATTTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGAAGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATTACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGGANCATNTTTACTCTTTAANTTAAAAATNTGTNCCANTTAAGTTNTTTTTGGGCATAATATTCAACATTTNTTNNTCATAAACACGATTCATGGTAAAAAGGCAGGGTATNTTTCANCCCATGTANCTGNTCCTTCGAGGATTTTTATAAAGGTGGT]




>consensus_6933#1
TACCAATTGGATGGAAGTGAACATGCTGAACGAGCATTTCANTGGGTATTGGACTAATAT
GAAGAGTTCAAATGATATTGTGAAATTTGTTAATATTGTTGAACCAGTTTATGCTACACC
TGCAGTTGGATTAACAATGGAAACTCCACCATTAACTGATATTACTAAAATAATGCAAGA
TAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATATATAGCTGAAGCAAAAAAATATGA
TATAAACTGTCAAGCATTTCTTCATGTAGACAATCGACCNGGTGCAGCTTTATTAAAATC
AATAGAAGATCATAATGCAAATTGGATTATTATGGGAAGTAGAGGTCTTGGTATTACTTC
GACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATTACATCATGCTCATATACCAGNGG
TAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGGANCATNTTTACTCTTTAANTTAA
AAATNTGTNCCANTTAAGTTNTTTTTGGGCATAATATTCAACATTTNTTNNTCATAAACA
CGATTCATGGTAAAAAGGCAGGGTATNTTTCANCCCATGTANCTGNTCCTTCGAGGATTT
TTATAAAGGTGGT

consensusID : consensus_6933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATTGTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTATATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGANCT]

[+] EMBL SM750                [NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATTGTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACTGATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTATATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGANCT]




>consensus_6933#2
NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATTGTGGAACCAGTT
TATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACTGATATTACTAAA
ATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTATATAGCTGACGCA
AAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGANCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6933#0      AGAAAAATCAAGAGTGGTTCTTTTACCAATTG-ATGGAAGTGAACATGCTGAACGAGCAT 59
consensus_6933#1      -----------------------TACCAATTGGATGGAAGTGAACATGCTGAACGAGCAT 37
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      TTCAATGG-TATTTGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATT 118
consensus_6933#1      TTCANTGGGTATTGGACTAATATGAAGAGTTCAAATGATATTGTGAAATTTGTTAATATT 97
consensus_6933#2      ------------NTGACTAANATGAAGAGTTCANATGATATNGTGATATTGGTTAATATT 48
                                    ****** ************ ******* **** *** *********

consensus_6933#0      GTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACT 178
consensus_6933#1      GTTGAACCAGTTTATGCTACACCTGCAGTTGGATTAACAATGGAAACTCCACCATTAACT 157
consensus_6933#2      GTGGAACCAGTTTATGNTACACCTGNAGTTGGNTTAACAACGGAAACTCCACCATNAACT 108
                      ** ************* ******** ****** ******* ************** ****

consensus_6933#0      GATATTACTAAAATAATGCAAGATAGCATTGATAAAGGCAAGTTATTGGGTAAAAAATAT 238
consensus_6933#1      GATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTTATTGGGTAAAAAATAT 217
consensus_6933#2      GATATTACTAAAATAATGCAAGATAGCATGGATAAAGGCAAGTNATNGGGTAAANACTAT 168
                      ***************************** ************* ** ******* * ***

consensus_6933#0      ATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGA 298
consensus_6933#1      ATAGCTGAAGCAAAAAAATATGATATAAACTGTCAAGCATTTCTTCATGTAGACAATCGA 277
consensus_6933#2      ATAGCTGACGCAAAAACNTATGATATANACTGTCAAGNATCTCTTCATGTAGACAATCGA 228
                      ******** *******  ********* ********* ** *******************

consensus_6933#0      CCTGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTTGATTATTATGGGA 358
consensus_6933#1      CCNGGTGCAGCTTTATTAAAATCAATAGAAGATCATAATGCAAATTGGATTATTATGGGA 337
consensus_6933#2      NCT--------------------------------------------------------- 231
                       *                                                          

consensus_6933#0      AGTAGAGGTCTTGGTAT-ACTTCGACGTACTTTTCTTGGAAGTGTTTCTGATTATGTATT 417
consensus_6933#1      AGTAGAGGTCTTGGTATTACTTCGACGTACTTTTCTTGGAAGTGTNTCTGATTATGTATT 397
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      ACATCATGCTCATATACCAGTGGTAATTGTTCCACCAAAGTAAAAAAAAAGTAACATTG- 476
consensus_6933#1      ACATCATGCTCATATACCAGNGGTAATGGTCCCACCAANGTAAAAAAAAAGTAACAATGG 457
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      ATCATATTTACTCTTTAAATTAAAAAATATGTACCATGTAAGATATATTTTGCCATAATT 536
consensus_6933#1      ANCATNTTTACTCTTTAANTTAAAAA-TNTGTNCCANTTAAGTTNTTTTTGGGCATAAT- 515
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      ATACAACATTTTTTTATCATAAAACACTGATTTCATTGTTAAAAAAAGACAGTGTAATAT 596
consensus_6933#1      ATTCAACATTTNTTNNTCATAAA-CACGA--TTCATGGT---AAAAAGGCAGGGTA---T 566
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      ATTCATTCCTATGTNNNANANNNTTTCGAAGGATGTTATAATAA---- 640
consensus_6933#1      NTTTCANCCCATGTANCTGNTCCTT-CGAGGATTTTTATAAAGGTGGT 613
consensus_6933#2      ------------------------------------------------