These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGTTTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTTAAGGTGTTATCTGTCAACCACCAGGGACTTCGGTGGTCAGACAGTATGTTGCAAGTAAGTTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATGTATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACTAAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGTACAATATT] [+] EMBL CD117198 [TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGTTTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTTAAGGTGTTATCTGTCAACCACCAGGGACTTCGGTGGTCAGACAGTATGTTGCAAGTAAGTTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATGTATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACTAAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGTACAATATT] consensusID : consensus_6934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence [AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA] [+] EMBL CD179370 [AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA] [+] EMBL CD179376 [AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA] consensusID : consensus_6934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [ATATTCGGCACGAGAGCCCGATGGTTGTTTTATTCAGTTTATTTTGCTGGTATTAGGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCCAAATTGAATGCAATCTGTTTAACGAAAGACCACAACCCTATGGATTATGAAGAACTAC] [+] EMBL CD082636 [ATATTCGGCACGAGAGCCCGATGGTTGTTTTATTCAGTTTATTTTGCTGGTATTAGGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCCAAATTGAATGCAATCTGTTTAACGAAAGACCACAACCCTATGGATTATGAAGAACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6934#0 -------------TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGT 47 consensus_6934#1 AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTA-AAGAAAACAGATGAGGAGT 59 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTG 107 consensus_6934#1 TTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTG 119 consensus_6934#2 ------------ATATTCGGCA-CGAGAGCCCGATGGTT--GTTTTATTCAGTTTATTT- 44 * ** *** ** ** * ** **** ***** ** *** consensus_6934#0 CGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAAT 167 consensus_6934#1 CGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAAT 179 consensus_6934#2 TGCTGGTATTAGGTTGTCCTAG---CCAGATTGGATGAGTCCCCATCTGAATCTAATAAA 101 ** * * ** *** * ** * **** * * ** ** consensus_6934#0 CCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGT 227 consensus_6934#1 CCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGC 239 consensus_6934#2 GTTGATG-TCAATAGTA-GCAATAC--------TTTAAGTAATCCCAAATTGAATGCAAT 151 * ** ****** * * **** * * ** * * *** * consensus_6934#0 TTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTT 287 consensus_6934#1 CAGATT--------GGATGAGTCCC-CATCTGAATCTAATAAAGTTGA-TGTCAATAGTA 289 consensus_6934#2 CTGTTTAACGAAAGACCACAACCCTATGGATTA-TGAAGAACTAC--------------- 195 ** * * * * * consensus_6934#0 AAGGTGTTATCTGTCAACCACCAGGGACTTCGGTG-GTCAGACAGTATGTTGCAAGTAAG 346 consensus_6934#1 GCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA------------------ 331 consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATG 406 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 TATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACT 466 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 AAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGT 526 consensus_6934#1 ------------------------------------------------------------ consensus_6934#2 ------------------------------------------------------------ consensus_6934#0 ACAATATT 534 consensus_6934#1 -------- consensus_6934#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||