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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 613 fasta sequence
[GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGAAATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAGCAGATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG--TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGC]
[+] EMBL CD083074 [GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGAAATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAGCAGATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGC]
[+] EMBL CD133221 [ CCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCCTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTCTACTCGCCGTCACTTGGCGTGAGTATTTAGTTTCCAG ]
[-] EMBL CD133382 [ CTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGT ]
consensusID : consensus_6936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[GCCCTCGAGAGCCAGAATTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACATATTAGACATCACGATACGCGGATCGCTCATCATGAAGTTGGAGTTAGTGATTTTCATACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAGATAAACGTTTCCTTGCATCAGGAGCAAATGACAACTTTGTTTGTGTTTGGCCTTTTAGTGATCTCTCAAAGCCTGAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC]
[+] EMBL CD083338 [GCCCTCGAGAGCCAGAATTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACATATTAGACATCACGATACGCGGATCGCTCATCATGAAGTTGGAGTTAGTGATTTTCATACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAGATAAACGTTTCCTTGCATCAGGAGCAAATGACAACTTTGTTTGTGTTTGGCCTTTTAGTGATCTCTCAAAGCCTGAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6936#0 GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGA 60
consensus_6936#1 -------------------------------------------GCCCTCGAGAGCCAGAA 17
** * * *
consensus_6936#0 AATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAG---CAG 117
consensus_6936#1 TTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTC 77
* **** * * ***** * * * ** ** ** * *
consensus_6936#0 ATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTC 177
consensus_6936#1 CCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCC 137
* * * * * * * ** * * **** * * * * *** * *** *
consensus_6936#0 GAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCT 237
consensus_6936#1 -AGTCACTAGTA-CGTACGATGCGACTTGGA------GGTGTCAGCTCTGCCGGCCGCGT 189
** * * *** **** *** * * ** ** ** * ** *
consensus_6936#0 ATAAGCGCGCTATACCCCAGATGCCAG-AGAAAGTTCTTGATGCTCCGGACATTATTGAT 296
consensus_6936#1 ACCAGC-CGTCA----CTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACAT 244
* *** ** * * * * ** * **** *** * * **
consensus_6936#0 GATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAAT 356
consensus_6936#1 ATTAGACATCACGATACGC-GGATCGCTCATC--ATGAAGTTGGAGTTAGTGATTTTCAT 301
* *** *** *** * ** * * ** * * * ** **
consensus_6936#0 ---CAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGT 413
consensus_6936#1 ACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAG---ATAAACGTTTCCTTGCATCA--- 355
** ******* * * ** * ** *** *** ** *** **
consensus_6936#0 GGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATT 473
consensus_6936#1 GGAGCAAATGACAACTTTGTTT-GTGTTTGGCCT--TTTAGTGAT-CTCTCAAAGCC--T 409
** * ** * * ***** * ****** * * * **** *** *** * *
consensus_6936#0 GCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTA 533
consensus_6936#1 GAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC------- 462
* ** ***** * * * * * * ** ** * ** * *
consensus_6936#0 CGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGT 593
consensus_6936#1 ------------------------------------------------------------
consensus_6936#0 GAGTATTTAGTTTCCAGTGC 613
consensus_6936#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||