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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 685 fasta sequence
[CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGATTATAGATGTAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGAATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAATTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTGTTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTA]
[+] EMBL CD083161 [CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGATTATAGATGTAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGAATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAATTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTGTTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTA]
[-] EMBL BG931112 [ CCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATC ]
[-] EMBL BG931026 [ TCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTCTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATC ]
consensusID : consensus_6938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTTTAAACTACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGATTTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTATTCTTGATCCATCAATACAAATTAATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTACTGATATACCATTAGTTTCAACTAGATCATTTTACCATCATTAGNCAGTTATTATTATTAT]
[+] EMBL CD111796 [TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTTTAAACTACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGATTTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTATTCTTGATCCATCAATACAAATTAATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTACTGATATACCATTAGTTTCAACTAGATCATTTTACCATCATTAGNCAGTTATTATTATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6938#0 CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGA-TTATAGATG 59
consensus_6938#1 ----TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTT 56
* ** * ** ** * * * **** * ***** *
consensus_6938#0 TAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAA 119
consensus_6938#1 TAAACT-----ACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGAT 111
** * * **** * * * * * * * * **** ** ** * *
consensus_6938#0 TTCTTTCGATT-GTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTA 178
consensus_6938#1 TTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATA------TCATTCA 165
** ** * * * ** * * * **** * * ** ***** ***** *
consensus_6938#0 ATATAAATGAT--AACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTT 236
consensus_6938#1 ATACCAATAGTTCGAACCCG-TACT-ATCCGATTTATTCTTGATCCATCAATACAAATTA 223
*** *** * * **** ** * ** * * ** * * *** *** **** *
consensus_6938#0 TAAACCATCTA-CTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTAC 295
consensus_6938#1 ATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTA---CTGATATAC 280
* * * ** * ** * *** ** * *** * ** * ** ** ***
consensus_6938#0 TACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCA 355
consensus_6938#1 CATT-AGTTTCAACTAGATCA-TTTTACCATCATTAGNCAGTTATTATTATTAT------ 332
* ***** * ** * ** * ** * * * * * * ** *
consensus_6938#0 CTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTG 415
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 ATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGA 475
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 ATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAA 535
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTG 595
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 TTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATAC 655
consensus_6938#1 ------------------------------------------------------------
consensus_6938#0 CAATAGTTCGAACCCGTACTATCCGATTTA 685
consensus_6938#1 ------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||