These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 685 fasta sequence [CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGATTATAGATGTAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGAATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAATTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTGTTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTA] [+] EMBL CD083161 [CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGATTATAGATGTAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGAATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAATTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTGTTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTA] [-] EMBL BG931112 [ CCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTTTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATC ] [-] EMBL BG931026 [ TCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAATTCTCTCGATTGTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTAATATAAATGATAACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTTTAAACCATCTACTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTACTACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCACTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTGATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATC ] consensusID : consensus_6938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTTTAAACTACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGATTTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTATTCTTGATCCATCAATACAAATTAATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTACTGATATACCATTAGTTTCAACTAGATCATTTTACCATCATTAGNCAGTTATTATTATTAT] [+] EMBL CD111796 [TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTTTAAACTACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGATTTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATATCATTCAATACCAATAGTTCGAACCCGTACTATCCGATTTATTCTTGATCCATCAATACAAATTAATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTACTGATATACCATTAGTTTCAACTAGATCATTTTACCATCATTAGNCAGTTATTATTATTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6938#0 CCAAGATTCGGCACGAGGTCAAATTCTTCTGTAAATGATGATAATATTGA-TTATAGATG 59 consensus_6938#1 ----TACTCTCGGCCGTACCAGGGCATTTGGGGGCTATTAGCTATATAAAATTATAACTT 56 * ** * ** ** * * * **** * ***** * consensus_6938#0 TAGATCTGCAAATATTCCATCATATGATTGTTTACAAATATCAGACGATCGAAATTCAAA 119 consensus_6938#1 TAAACT-----ACATTCATTACTTTTAATATAAAAATATATTTGATCATATTGTATTGAT 111 ** * * **** * * * * * * * * **** ** ** * * consensus_6938#0 TTCTTTCGATT-GTTTATGTCGTATTACATCAACTCAAACTGATATACATTCATCATTTA 178 consensus_6938#1 TTTTTCCTCTCCGCTTGCATACCACTGCATCTTTTATAGCTCATATA------TCATTCA 165 ** ** * * * ** * * * **** * * ** ***** ***** * consensus_6938#0 ATATAAATGAT--AACCCCGCTATTGATTCAGTGTACACATATTCCGAAAATCCAAACTT 236 consensus_6938#1 ATACCAATAGTTCGAACCCG-TACT-ATCCGATTTATTCTTGATCCATCAATACAAATTA 223 *** *** * * **** ** * ** * * ** * * *** *** **** * consensus_6938#0 TAAACCATCTA-CTGATGATACCTGTCAAACTCTTCTTGCATGTGAAATTCCTAATCTAC 295 consensus_6938#1 ATGAGTACAAAACTTTTAATCATTCAAAAATTCATATTGTACATGGTA---CTGATATAC 280 * * * ** * ** * *** ** * *** * ** * ** ** *** consensus_6938#0 TACCCAGTTTTATTCCTATAAATTGTGCCTTGACAAATCCAATGGAAGAATATTTACCCA 355 consensus_6938#1 CATT-AGTTTCAACTAGATCA-TTTTACCATCATTAGNCAGTTATTATTATTAT------ 332 * ***** * ** * ** * ** * * * * * * ** * consensus_6938#0 CTGATGTACTTCATTGTTTATCAGCTTCGGAGCATATTTCGAGTGATTTTTCACAGATTG 415 consensus_6938#1 ------------------------------------------------------------ consensus_6938#0 ATCTGACGAAGCCTACAGATTCATTATGGTGTTGTAATCTCCTTTCATCTCTTGACTTGA 475 consensus_6938#1 ------------------------------------------------------------ consensus_6938#0 ATTCATTGAACAAAATTATTGCACCATCATATTCATCGGTTATTTCTTCTAATGGTGAAA 535 consensus_6938#1 ------------------------------------------------------------ consensus_6938#0 TTATTCGCTTGGACCCTCCCACAAATAATGATATTTCTAAGTCTTCAATGTCTTCTCTTG 595 consensus_6938#1 ------------------------------------------------------------ consensus_6938#0 TTCCATGCGACTNTTTCCGCTGGAACTCAATTGANAAACAGCTCATATATCATTCAATAC 655 consensus_6938#1 ------------------------------------------------------------ consensus_6938#0 CAATAGTTCGAACCCGTACTATCCGATTTA 685 consensus_6938#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||