These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 564 fasta sequence [ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCTATCCTTTCAGTAGTTTATAAAGATTT] [-] EMBL CD178964 [ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTT ] [+] EMBL CD083347 [ AAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCATGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGAGCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCCTGAAGATGCCAGGCAACATTTTGTTGACTTTTTCACTGGTCCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGAAGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCT ] [-] EMBL AI975444 [ CGGTAACATCCAGAAATTTAATACATGATAACTGCATTTTTGAGAGATATTTTAACAAAACAGCTTGAAGATGTCAGGGAACATTTTGTTGACTTTTTCAATGGTTCAAATCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTCCCATGACGGTGAAGTCATACGCTCTTTAGCCCAATAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTGGGGTTTGTCTTAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCCATTAATTTTTGTTTCGTTAACTTCTGCCCTTCATATTTTTATTCATAAATATTTATCTATCCTTTCAGTAGTTTATAAAGATTT] consensusID : consensus_6939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 111 fasta sequence [ATCTCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTCAATTAGTCCTAT] [+] EMBL CD141953 [ATCTCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCTCAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTCAATTAGTCCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6939#0 ATCACCGGCCTGTTTGGTCTTCAAGGTCATGTTCGACACAGGATCTTACCGTCCTAACCA 60 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TGACCCACCAGCTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCT 120 consensus_6939#1 ------ATCT-CTGGGATGGAACCATATGATCTTCCTAGAGAAGGAGATTTAGGAGCCCT 53 * * ************************************************* consensus_6939#0 CAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGCCCAAACTCGCGTAAATAATGA 180 consensus_6939#1 CAGCAATGCTCAACAGGAGGCAACAAATAAGCTCAAAGTTAGAGTC---------AATTA 104 ************************************** * *** * consensus_6939#0 GCATTATTTACGGAAACATCCAGAAATTAAATACATGATAACTGCATTTTTGAGAGATAT 240 consensus_6939#1 GTCCTAT----------------------------------------------------- 111 * *** consensus_6939#0 TTTAACAAAACAGCCTGAAGATGCCAGGGAACATTTTGTTGACTTTTTCACTGGTCCAAA 300 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TCTTGAGTCCAATATGGAAAATATCAAGAGAGAATATATAAATCAGTACCATGACGACGA 360 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 AGTCATACGCTCTTTAGCCCAAGAAGAACCTCAACCGGAAATCTAATTTATGCTTTATTG 420 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 GGGTTTGTCTGAGAAAACAATTGGGTGCATGTAGTCTGTAAATTGTTAAAAACGTACTCC 480 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 ATTAATTTTTGTTTCGTTTACTTCTGCCCTTCCTATTTTTATTCATAAATATTTATCTAT 540 consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 CCTTTCAGTAGTTTATAAAGATTT 564 consensus_6939#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||