These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence [CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA] [+] EMBL CD083406 [CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA] [+] EMBL CD090382 [ GGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCGAGTAGTCCGTTTT AATGTATGTA ] consensusID : consensus_6940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 499 fasta sequence [CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATTATGCAGTAGAAAGCTATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTGAGTTCACTAAGGATCGAACTCATTGCCTTTAGGTTTTAACAATAGCTGTAGACCAGTAATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGAATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA] [+] EMBL CD200382 [CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATTATGCAGTAGAAAGCTATTTTGTCGTTGTT ] [+] EMBL CD169258 [ ACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATAAACTGAAGAGCCATG AAAAAATATAATGCAGTAGAAAGCTATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTGAGTTCACTAAGGATCGAACTCATTGCCTTTAGGTTTTAACAATAGCTGTAGACCAGTAATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGAATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6940#0 -----CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCA 55 consensus_6940#1 CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCA 60 ******************************************************* consensus_6940#0 GTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAA 115 consensus_6940#1 GTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAA 120 ************************************************************ consensus_6940#0 CATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCAC 175 consensus_6940#1 CATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCAC 180 ************************************************************ consensus_6940#0 CAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCA 235 consensus_6940#1 CAAATAAAGAAATGTATTTATCTCAGGT--AACGTATAATGTGTCTATGGTTTTTTGATG 238 **************************** ** ** * * ** * * *** consensus_6940#0 AAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAA 295 consensus_6940#1 T-------TTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATT 291 **** ** * * ** *** * * * ** ** ** * consensus_6940#0 CTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATC-ATGTCACCTCATA 354 consensus_6940#1 ATGCAGTAGAAAGC---TATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTG 348 ** ** ** * *** ** * * * *** ** * * * * * ** * consensus_6940#0 CATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTG 414 consensus_6940#1 -AGTTCACT------AAGGATCGAACTCATTGCCTTTAGGTTTTAACAAT-AGCTGTAGA 400 * **** * * **** * * **** * ** *** * * * consensus_6940#0 ACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGA 474 consensus_6940#1 CCAGTA-ATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGA 459 ** ** * ** * *** ** * * ** * * * ** ******** ** consensus_6940#0 CAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA 531 consensus_6940#1 --ATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA--------------- 499 *** ** ** * ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||