cluster # 6940

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Schistosoma mansoni
cluster # 6940 cluster # 6940 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6940#0 length = 531 sequences # 2

consensus_6940#1 length = 499 sequences # 2

consensusID : consensus_6940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 531
fasta sequence

                              [CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA]

[+] EMBL CD083406             [CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA]
[+] EMBL CD090382             [                                                                                                                                                                                                        GGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCATTTTAATTCGAGTAGTCCGTTTT AATGTATGTA                  ]




>consensus_6940#0
CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCT
AGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTA
CCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAAT
AAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCAAAAGT
CCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAACTGTC
GTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATCATGTCACCTCATACATTTC
ATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTGACATTA
TAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGACAGCAT
TTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA

consensusID : consensus_6940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 499
fasta sequence

                              [CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATTATGCAGTAGAAAGCTATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTGAGTTCACTAAGGATCGAACTCATTGCCTTTAGGTTTTAACAATAGCTGTAGACCAGTAATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGAATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA]

[+] EMBL CD200382             [CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCAGTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAACATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATTATGCAGTAGAAAGCTATTTTGTCGTTGTT                                                                                                                                                                                   ]
[+] EMBL CD169258             [                                                                                                                                                                           ACATAGCACCAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTTTGAACACAGTATAGTTTTCACCATAAACTGAAGAGCCATG AAAAAATATAATGCAGTAGAAAGCTATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTGAGTTCACTAAGGATCGAACTCATTGCCTTTAGGTTTTAACAATAGCTGTAGACCAGTAATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGAATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA]




>consensus_6940#1
CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCA
GTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAA
CATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCAC
CAAATAAAGAAATGTATTTATCTCAGGTAACGTATAATGTGTCTATGGTTTTTTGATGTT
TGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATTATGCAGTAG
AAAGCTATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTGAGTTCACTAAGG
ATCGAACTCATTGCCTTTAGGTTTTAACAATAGCTGTAGACCAGTAATCAAATTTCCAAC
TTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGAATCTTTAAAGTCTCTCTTCCT
ATTCCTCTGCTGGGNNNAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6940#0      -----CAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCA 55
consensus_6940#1      CGAATCAAAACGTTGTTTGTCCAAATCAGTCGTTTGCTTTCAGTAATACCTTAAACTCCA 60
                           *******************************************************

consensus_6940#0      GTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAA 115
consensus_6940#1      GTCCTAGTAATCCATGCACGAACACATTATCTCAGCTATGGAACATGAATATGAACCAAA 120
                      ************************************************************

consensus_6940#0      CATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCAC 175
consensus_6940#1      CATTACCAAATCAAACGTTTGGGAATTTCGTTTCTCACTCAACAAATAACAACATAGCAC 180
                      ************************************************************

consensus_6940#0      CAAATAAAGAAATGTATTTATCTCAGGTTAAAAGTCAGTTAACTTCATTATATCTTGGCA 235
consensus_6940#1      CAAATAAAGAAATGTATTTATCTCAGGT--AACGTATAATGTGTCTATGGTTTTTTGATG 238
                      ****************************  ** **    *   *  **  * * ***   

consensus_6940#0      AAAGTCCACTGAATCCATAAAAATTGTCAGCTAACTGTCCGATTGTTTGGAAGAATTTAA 295
consensus_6940#1      T-------TTGAACACAGTATAGTTTTCACCATANACTGAAGAGCCATGAAAAAAATATT 291
                               ****  **  * * ** *** *  *   *         ** ** ** *   

consensus_6940#0      CTGTCGTCAAATGTGCATATCTTATAGAAAATACAAACAAATTATC-ATGTCACCTCATA 354
consensus_6940#1      ATGCAGTAGAAAGC---TATTTTGTCGTTGTTCAGAACTCATCAACGACGCAAACTGGTG 348
                       **  **  ** *    *** ** * *    *   ***  ** * * * *  * **  * 

consensus_6940#0      CATTTCATTGTTCTCATAGATCAACTGTGATATATTTAAAAGTGAATAATCAAATATTTG 414
consensus_6940#1      -AGTTCACT------AAGGATCGAACTCATTGCCTTTAGGTTTTAACAAT-AGCTGTAGA 400
                       * **** *      *  **** *      *   ****    * ** *** *  * *   

consensus_6940#0      ACATTATAATTCATGTTCAATTTTCTACCATATAAATTTAAATCTTTTGTCTTATCGGGA 474
consensus_6940#1      CCAGTA-ATCAAATTTCCAACTTCATTTATTTTACAATACAGGTATTGTTCTTATCGTGA 459
                       ** ** *    ** * *** **  *    * ** * *  *    **  ******** **

consensus_6940#0      CAGCATTTTAATTCCAGTAGTCCGTTTTAAATGTATGTAAAAATGTTTGTATTTGTA 531
consensus_6940#1      --ATCTTTAAAGTCTCTCTTCCTATTCCTCTGCTGGGNNNAA--------------- 499
                           *** ** **       *  **       *  *   **