cluster # 6943

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Schistosoma mansoni
cluster # 6943 cluster # 6943 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6943#0 length = 515 sequences # 1

consensus_6943#1 length = 484 sequences # 2
consensus_6943#2 length = 359 sequences # 1

consensusID : consensus_6943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATACATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAAAAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTTAGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTTATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAATTGACTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCAGCAGCACAGATCCGTATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGGGCGGATTAAATCTGAACTTACAGAATAGTAATGGCAGATGA]

[+] EMBL AI395372             [TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATACATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAAAAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTTAGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTTATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAATTGACTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCAGCAGCACAGATCCGTATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGGGCGGATTAAATCTGAACTTACAGAATAGTAATGGCAGATGA]




>consensus_6943#0
TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATA
CATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAA
AAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTT
AGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTT
ATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCAT
GTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAATTGACTA
AGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCAGCAG
CACAGATCCGTATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGGGCGGAT
TAAATCTGAACTTACAGAATAGTAATGGCAGATGA

consensusID : consensus_6943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 484
fasta sequence

                              [TATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAATCGACTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCAGCAACACAGATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGT----TAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGGACAGCGGTA]

[-] EMBL CD154561             [TATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAATCGACTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCAGCAACACAGATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGT    TAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGGACAGCGGTA]
[+] EMBL CD094117             [                                                                                                                                                                                         GATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAAAGGCTATGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGTCTACTAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTA                                                            ]




>consensus_6943#1
TATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCA
TGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAATCGACT
AAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCAGCA
ACACAGATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACG
GATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGAC
AAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGTTAAGAACTCTGG
CGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCA
CTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGGACAGC
GGTA

consensusID : consensus_6943#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [TGTGTTCTGGTGTTTAGTCTATGCATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGTTGTTAAGTCATGTAACTTCAACTTGCACAAGACAAAGGGTTGGCTGTGATCTTCTATCTATGTAGGTCAACAACAACATTTGCCAGTGCCCGTCCGGATACCGCTGTCCAGTATTCGTGCACAGACAAGGCCTCTCGGAAATATTGTCCCTGCCAACGTACCTCGACCACCCATGGTTAACCAGGTGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTGTGATGCAAGTTAGGAGTTTGCCAGTTGGACAAACTGTACCCCACCCC]

[+] EMBL CD200833             [TGTGTTCTGGTGTTTAGTCTATGCATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGTTGTTAAGTCATGTAACTTCAACTTGCACAAGACAAAGGGTTGGCTGTGATCTTCTATCTATGTAGGTCAACAACAACATTTGCCAGTGCCCGTCCGGATACCGCTGTCCAGTATTCGTGCACAGACAAGGCCTCTCGGAAATATTGTCCCTGCCAACGTACCTCGACCACCCATGGTTAACCAGGTGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTGTGATGCAAGTTAGGAGTTTGCCAGTTGGACAAACTGTACCCCACCCC]




>consensus_6943#2
TGTGTTCTGGTGTTTAGTCTATGCATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATT
TCTGTTTTGTTGTTAAGTCATGTAACTTCAACTTGCACAAGACAAAGGGTTGGCTGTGAT
CTTCTATCTATGTAGGTCAACAACAACATTTGCCAGTGCCCGTCCGGATACCGCTGTCCA
GTATTCGTGCACAGACAAGGCCTCTCGGAAATATTGTCCCTGCCAACGTACCTCGACCAC
CCATGGTTAACCAGGTGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAA
GTGCTCCGAGTGTGATGCAAGTTAGGAGTTTGCCAGTTGGACAAACTGTACCCCACCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6943#0      TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATA 60
consensus_6943#1      ------------------------------------------------------------
consensus_6943#2      ------------------------------------------------------------
                                                                                  

consensus_6943#0      CATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAA 120
consensus_6943#1      ------------------------------------------------------------
consensus_6943#2      ------------------------------------------------------------
                                                                                  

consensus_6943#0      AAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTT 180
consensus_6943#1      ------------------------------------------------------------
consensus_6943#2      ------------------------------------------------------------
                                                                                  

consensus_6943#0      AGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTT 240
consensus_6943#1      -----------------------------------------------------------T 1
consensus_6943#2      ------------------------------------TGTGTTCTGGTGTTTAGTCTATGC 24
                                                                                  

consensus_6943#0      ATGTTGTTCT--AGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTC 298
consensus_6943#1      ATGTTGTTCT--AGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTC 59
consensus_6943#2      ATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGT-TGTTAAGTCATGT 83
                      ** ** ** *  ** * **   * *  * ****     *** * *  ** ***  ***  

consensus_6943#0      ATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAA-TTGA 357
consensus_6943#1      ATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAA-TCGA 118
consensus_6943#2      AACTTC--AACTTGCACAAGACAAAGGGTTGGCTGTG-ATCTTCTATCTATGTAGGTCAA 140
                      *  ***  *  ****  * *  ****    *     * ** ** * **** ***  *  *

consensus_6943#0      CTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCA- 416
consensus_6943#1      CTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCA- 177
consensus_6943#2      CAACAACATTTGCCAGTGC-CCGTCCGGATAC-CGCTGTCCAGTATTCGTGCACAGACAA 198
                      * *  * *****    **     **  ** *  *    *****     *    * * ** 

consensus_6943#0      -GCAGCACAGATCCGT-ATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGG 474
consensus_6943#1      -GCAACACAGATCCGT-ATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGA 235
consensus_6943#2      GGCCTCTCGGAAATATTGTCCCTGCCAACGTACC--TCGACCA-CCCATGGTTAACCAGG 255
                       **  * * **    *  * * *** **  **    *  *  *      * *      * 

consensus_6943#0      --GCGGATTAAATCTGAACTTACAGAATAGT--AATG-GCAGATGA-------------- 515
consensus_6943#1      CCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATA 295
consensus_6943#2      ---TGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTG 312
                          * * *   *             **     *         *                

consensus_6943#0      ------------------------------------------------------------
consensus_6943#1      TAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGTTAAGAAC 355
consensus_6943#2      TGATGCAA--GTTAGGAGTTTGCCAGT-TGGACAAACTGTACCCCACCCC---------- 359
                                                                                  

consensus_6943#0      ------------------------------------------------------------
consensus_6943#1      TCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACA 415
consensus_6943#2      ------------------------------------------------------------
                                                                                  

consensus_6943#0      ------------------------------------------------------------
consensus_6943#1      TATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGG 475
consensus_6943#2      ------------------------------------------------------------
                                                                                  

consensus_6943#0      ---------
consensus_6943#1      ACAGCGGTA 484
consensus_6943#2      ---------