cluster # 6948

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Schistosoma mansoni
cluster # 6948 cluster # 6948 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6948#0 length = 802 sequences # 3

consensus_6948#1 length = 533 sequences # 1

consensusID : consensus_6948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 802
fasta sequence

                              [AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTACAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGATTTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAAGCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCTGGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCAGGCCGGGCCGGCCAATCACTAGGAA]

[+] EMBL CD159320             [AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTACAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGATTTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAAGCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGA                                                                                                                                                                                                                                                                  ]
[+] EMBL CD096016             [                                                                                                                                                                                    GCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCC                                                                                                                                                                           ]
[-] EMBL CD200879             [                                                                                                                                                                                                                                                                                                                                                                                                                                          AACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCTGGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCAGGCCGGGCCGGCCAATCACTAGGAA]




>consensus_6948#0
AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTA
CAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGAT
TTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAA
GCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGT
TAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATC
CTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAAT
CAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAG
GCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCT
CCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATA
ATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTA
TTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCTGGA
AACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTT
TACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCAGGC
CGGGCCGGCCAATCACTAGGAA

consensusID : consensus_6948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [TGGAAACGCCAAGGTCGACTTTTGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACTCAGACCAATAGAATCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTTCAAAGTTGACGTGGAACCAACTTTTCGTTGTACTAAATGCTTTTAGTACAGATAATGAAGTTAGTCAGTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAACTGCAAAGGATAATCAGAAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCATACGATCTATCTGCCTATGGTCGCTTACAACCTTTATCTCACCATCTTATGCGTACAATGTCCGTTCATGTAAGAATGCTAGTTTTACACTTCTTCCTACAAAAATTCTCGGTCCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCTA]

[-] EMBL CD094364             [TGGAAACGCCAAGGTCGACTTTTGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACTCAGACCAATAGAATCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTTCAAAGTTGACGTGGAACCAACTTTTCGTTGTACTAAATGCTTTTAGTACAGATAATGAAGTTAGTCAGTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAACTGCAAAGGATAATCAGAAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCATACGATCTATCTGCCTATGGTCGCTTACAACCTTTATCTCACCATCTTATGCGTACAATGTCCGTTCATGTAAGAATGCTAGTTTTACACTTCTTCCTACAAAAATTCTCGGTCCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCTA]




>consensus_6948#1
TGGAAACGCCAAGGTCGACTTTTGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACAT
GTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACTC
AGACCAATAGAATCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTTCAAAGT
TGACGTGGAACCAACTTTTCGTTGTACTAAATGCTTTTAGTACAGATAATGAAGTTAGTC
AGTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAACTGCAAAGGATAATCAGA
AACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCAT
ACGATCTATCTGCCTATGGTCGCTTACAACCTTTATCTCACCATCTTATGCGTACAATGT
CCGTTCATGTAAGAATGCTAGTTTTACACTTCTTCCTACAAAAATTCTCGGTCCTTCCGA
ATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6948#0      AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTA 60
consensus_6948#1      ------------------------------------------------------------
                                                                                  

consensus_6948#0      CAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGAT 120
consensus_6948#1      ---------------------------------------TGG-AAACGCCAAGGTCGACT 20
                                                             **  ****  ** ***    *

consensus_6948#0      TTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAA 180
consensus_6948#1      TT--TGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGA 78
                      **  ** * * * *  **       **      *** *    **     *   ***** *

consensus_6948#0      GCCATT--ATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATAT 238
consensus_6948#1      CTTGGTCAAGATCACTTGCCACGTGTTA--TGCCAC--CAGCACTCA--GACCAATAGAA 132
                           *  *  * *  **   **** **  *** **  *** * ***  *   ** * * 

consensus_6948#0      GTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGA 298
consensus_6948#1      TCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTT------CAAAGTTGACG- 185
                           ** **  ****   ***   *     * * ** ****        *** *** * 

consensus_6948#0      TCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCA 358
consensus_6948#1      --TGGAACCAACTTTTCGTTGTACTAAATGCT--TTTAGTACAGATAATGAAGTTAGTCA 241
                          ** * * ** *   *  * *** *   *  * ***** * *  **     * ****

consensus_6948#0      ATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTT 418
consensus_6948#1      GTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAA--CTGCAAAGGATAATCAG 299
                       * **   * **   ***     *       * * *** *   ****  *  *  ***  

consensus_6948#0      AGGCAAAGA-ACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTA 477
consensus_6948#1      AAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCA 359
                      *  *    * *   ***  **        * ** ***     * *    *  **** * *

consensus_6948#0      TCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAG 537
consensus_6948#1      TA-CGATCTATCTGCCTATGGTCGCTTACAACCTTTATC-TCACCATCTTATGCGTACAA 417
                      *  * *   *  **  *** *     *   * **  *** * * * * ***    ** * 

consensus_6948#0      ATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAAT 597
consensus_6948#1      TGTCCGTTCATGTA--AGAATGCTAGTTTTACACTTCTTCCTACAA---AAATTCTCGGT 472
                           *   *** *  * **    *    * ******* *  *  *   * *       *

consensus_6948#0      GTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCT 657
consensus_6948#1      CCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCT 532
                         * *  * *  **      ** ***  *  *     *      * *** * *  * **

consensus_6948#0      GGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATG 717
consensus_6948#1      A----------------------------------------------------------- 533
                                                                                  

consensus_6948#0      TTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCA 777
consensus_6948#1      ------------------------------------------------------------
                                                                                  

consensus_6948#0      GGCCGGGCCGGCCAATCACTAGGAA 802
consensus_6948#1      -------------------------