cluster # 6954

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Schistosoma mansoni
cluster # 6954 cluster # 6954 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6954#0 length = 420 sequences # 1

consensus_6954#1 length = 357 sequences # 3

consensusID : consensus_6954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAAGCAGGTTCAACAAGGTTTGCCCAGTAACGANAAATATCCTGCACAACTCCCATCGCCATTTTTTGAAATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTCCTAA]

[+] EMBL AI395539             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAAGCAGGTTCAACAAGGTTTGCCCAGTAACGANAAATATCCTGCACAACTCCCATCGCCATTTTTTGAAATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTCCTAA]




>consensus_6954#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTA
TGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCG
TAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCAT
TTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTT
CCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAAGCAGGTTCAAC
AAGGTTTGCCCAGTAACGANAAATATCCTGCACAACTCCCATCGCCATTTTTTGAAATTC
GGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTCCTAA

consensusID : consensus_6954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 357
fasta sequence

                              [TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG-AACGCAGG-TTTTTCACGAGGTTTGCTCAGTTAAC-AGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAAGTCGCCTCTCCCG]

[+] EMBL AI395831             [TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG AACGCAGGTTTTTTCACGAGG TTGCTCAGTTAAC AGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAAGTCGCCTC     ]
[+] EMBL CD202706             [                                                                                                  CGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG AACGCAGG TTTTTCACGAGGTTTGCTCAG TAACGAGAAATATCGTGCACTAACTCTCATCGCCATTTTGAAAAGTCGGGAATCCCG]
[-] EMBL AA559381             [                                                                                                                                                                                           TTATCAATCTNTATTGGATCCGACAGCCCACCAGGTTTCCCCTNGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCGAAACGCAGG TTTTTCANGAGGTTTGCT                                                             ]




>consensus_6954#1
TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTA
TAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGT
CACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCT
TCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAG
TTTTCCCATTGCTTTTTGGAGCTCATGAGCGAACGCAGGTTTTTCACGAGGTTTGCTCAG
TTAACAGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAAGTCGCCTCTCCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6954#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTA 60
consensus_6954#1      ---------------TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTA 45
                                     *********************************************

consensus_6954#0      TGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCG 120
consensus_6954#1      TGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCG 105
                      ************************************************************

consensus_6954#0      TAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCAT 180
consensus_6954#1      TAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCAT 165
                      ************************************************************

consensus_6954#0      TTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTT 240
consensus_6954#1      TTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTT 225
                      ************************************************************

consensus_6954#0      CCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAA-GCAGGTTCA- 298
consensus_6954#1      CCCCTCGATGTCCAGTTTTCCCATT-GCTTTTTGGAGCTCATGAGCGAACGCAGGTTTTT 284
                      ************** ********** * **************** **** *******   

consensus_6954#0      -ACAAGGTTTGCCCAGTAACGANAAATATCCTGCA-CAACTCCCATCGCCATTTTTTGAA 356
consensus_6954#1      CACGAGGTTTGCTCAGTTAACAGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAA 344
                       ** ******** **** *  * *******  ***  ***** ** ** ******   **

consensus_6954#0      ATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTC 416
consensus_6954#1      GTCGCCTCTCCCG----------------------------------------------- 357
                       *       ****                                               

consensus_6954#0      CTAA 420
consensus_6954#1      ----