These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAAGCAGGTTCAACAAGGTTTGCCCAGTAACGANAAATATCCTGCACAACTCCCATCGCCATTTTTTGAAATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTCCTAA] [+] EMBL AI395539 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAAGCAGGTTCAACAAGGTTTGCCCAGTAACGANAAATATCCTGCACAACTCCCATCGCCATTTTTTGAAATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTCCTAA] consensusID : consensus_6954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 357 fasta sequence [TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG-AACGCAGG-TTTTTCACGAGGTTTGCTCAGTTAAC-AGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAAGTCGCCTCTCCCG] [+] EMBL AI395831 [TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTATGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG AACGCAGGTTTTTTCACGAGG TTGCTCAGTTAAC AGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAAGTCGCCTC ] [+] EMBL CD202706 [ CGCCCCGTAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCATTTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTTCCCCTCGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCG AACGCAGG TTTTTCACGAGGTTTGCTCAG TAACGAGAAATATCGTGCACTAACTCTCATCGCCATTTTGAAAAGTCGGGAATCCCG] [-] EMBL AA559381 [ TTATCAATCTNTATTGGATCCGACAGCCCACCAGGTTTCCCCTNGATGTCCAGTTTTCCCATTGCTTTTTGGAGCTCATGAGCGAAACGCAGG TTTTTCANGAGGTTTGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6954#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTA 60 consensus_6954#1 ---------------TTTTTTTTTTTTTTTTTGAACAATACACAAAAACCAAACATTTTA 45 ********************************************* consensus_6954#0 TGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCG 120 consensus_6954#1 TGATTCTAACTTGTATAACTACAGATCATAAATATTAAGTCAAGTGAATCAACCGCCCCG 105 ************************************************************ consensus_6954#0 TAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCAT 180 consensus_6954#1 TAAGTGCAAGTATGTCACCACAAATGGCTGAAAGAAACTCAGACACATAAATGCAACCAT 165 ************************************************************ consensus_6954#0 TTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTT 240 consensus_6954#1 TTTTACGGCCAGTCTTCCTGGGTTATCAATCTTTATTGGATCCAACAGCCCACCAGGTTT 225 ************************************************************ consensus_6954#0 CCCCTCGATGTCCAATTTTCCCATTTGTTTTTTGGAGCTCATGAACGAA-GCAGGTTCA- 298 consensus_6954#1 CCCCTCGATGTCCAGTTTTCCCATT-GCTTTTTGGAGCTCATGAGCGAACGCAGGTTTTT 284 ************** ********** * **************** **** ******* consensus_6954#0 -ACAAGGTTTGCCCAGTAACGANAAATATCCTGCA-CAACTCCCATCGCCATTTTTTGAA 356 consensus_6954#1 CACGAGGTTTGCTCAGTTAACAGAAATATCGGGCAATAACTCTCAACGGCATTTTGGAAA 344 ** ******** **** * * ******* *** ***** ** ** ****** ** consensus_6954#0 ATTCGGAACCCCGCTTTATACAATCCTCCCCGCCGATTCCTTGGCCCCAAGGGCAAATTC 416 consensus_6954#1 GTCGCCTCTCCCG----------------------------------------------- 357 * **** consensus_6954#0 CTAA 420 consensus_6954#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||