cluster # 6955

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Schistosoma mansoni
cluster # 6955 cluster # 6955 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6955#0 length = 836 sequences # 3

consensus_6955#1 length = 580 sequences # 1

consensusID : consensus_6955#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 836
fasta sequence

                              [TAATAATTACGCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAAAATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGACTGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGAGTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAATTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGGGCTTGCTACTTT]

[+] EMBL AI975386             [TAATAATTACGCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGAT                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD186995             [                                                                        GATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCTTAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATTACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAG                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD189369             [                                                                                                                                                                                                                                                                                           TCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCTTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAAAATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGACTGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGAGTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAATTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGGGCTTGCTACTTT]




>consensus_6955#0
TAATAATTACGCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGAGAGCAACCA
CTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAA
ACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTG
TAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGT
TAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGA
AAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAA
AAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCA
AACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAG
AATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAGGTGTTCGGGG
TAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAAAATCGACATCAAACTA
CAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGACTGAAACAATTTGACCA
AAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGAGTTCAATTACATGGGA
TGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAATTGTAATACTTCCAAT
GCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGGGCTTGCTACTTT

consensusID : consensus_6955#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence

                              [ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTTCAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATGTATGTTGCTTATTTTTCAAAATTAACTATTATTAGTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTAACAAATTCATTTCTCATCTAAAATATGAGCAATACAATACTAGTACAAGTATAATTGCCCAAATAAAGAGTTGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTATACTATACCTTTTACAGTCAAATTAGTATCAAGATTACGCCAAAGATGAAGCAGATGGGCATAAGCGCTCCAACTCTTAATATATTGACCTAATCTATTACGTAACTATCAGCGT]

[+] EMBL CD127290             [ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTTCAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATGTATGTTGCTTATTTTTCAAAATTAACTATTATTAGTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTAACAAATTCATTTCTCATCTAAAATATGAGCAATACAATACTAGTACAAGTATAATTGCCCAAATAAAGAGTTGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTATACTATACCTTTTACAGTCAAATTAGTATCAAGATTACGCCAAAGATGAAGCAGATGGGCATAAGCGCTCCAACTCTTAATATATTGACCTAATCTATTACGTAACTATCAGCGT]




>consensus_6955#1
ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGC
ACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTT
CAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAG
GAACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTA
CCAAATGTATGTTGCTTATTTTTCAAAATTAACTATTATTAGTTTGTAGTGTGTTAACTG
AACTGTTCGATGGAGAAGATTCTTCTAACCAGGTAACAAATTCATTTCTCATCTAAAATA
TGAGCAATACAATACTAGTACAAGTATAATTGCCCAAATAAAGAGTTGTGCAACATTCGA
CCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTATACTATACCTTTTAC
AGTCAAATTAGTATCAAGATTACGCCAAAGATGAAGCAGATGGGCATAAGCGCTCCAACT
CTTAATATATTGACCTAATCTATTACGTAACTATCAGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6955#0      ---------------------------------------TAATAATTACGCTGAGGGAGC 21
consensus_6955#1      ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGC 60
                                                             ********** **********

consensus_6955#0      ACTCAGGCTCGCTGAAGGCTGTAAAAACG------------------------------- 50
consensus_6955#1      ACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTT 120
                      *****************************                               

consensus_6955#0      ---AGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAG 107
consensus_6955#1      CAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAG 180
                         *********************************************************

consensus_6955#0      GAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATG 167
consensus_6955#1      GA---ACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATG 237
                      **   *******************************************************

consensus_6955#0      TTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGG 227
consensus_6955#1      TTACCAAAT------GTATGTTGCTT--ATTTTTCAAAATTAACTATTATTAGTTTGTAG 289
                      *********      ** ****   *  * * *** *     *  *** **        *

consensus_6955#0      TTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTT-CTGTTGGTCAAAAGCGTTCT 286
consensus_6955#1      TGTGTTAACTGAACTGTTCGATGGA-GAAGATTCTTCTAACCAGGTAACAAATTCATTTC 348
                      * **  **  *    *    *   * * * *** ****  *       ****  * **  

consensus_6955#0      TCAG-TAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAG 345
consensus_6955#1      TCATCTAAAATATGAGCAATACAATACTAGTAC--AAGTATAATTGCCCAAATAAAGAGT 406
                      ***  ** * *  **  *  *  ** **  * *  **  * * **    **** *  *  

consensus_6955#0      TACA-AGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTG 404
consensus_6955#1      TGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTAT 466
                      *    * * * *    * * ** * *         **   *     *     * * *   

consensus_6955#0      AGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAA 464
consensus_6955#1      ACTATACCTTTT-----ACAGTCAAATTAGTATCAAGATTACGCCAAAGAT-GAAGCAGA 520
                      * *  **  ***     ****    **   *      *  *   * ** ** *** ** *

consensus_6955#0      ATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTC 524
consensus_6955#1      TGGGCATAAGCGCTCCAA--CTCTTAATATATTGAC---CTAATCTAT---TACGTAACT 572
                        *  *  * *  *  **      * ** *** *     **** * **   ** * *   

consensus_6955#0      GTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAA 584
consensus_6955#1      ATCAGCGT---------------------------------------------------- 580
                       **   **                                                    

consensus_6955#0      AATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGAC 644
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      TGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGA 704
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAA 764
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      TTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGG 824
consensus_6955#1      ------------------------------------------------------------
                                                                                  

consensus_6955#0      GCTTGCTACTTT 836
consensus_6955#1      ------------