cluster # 6964

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Schistosoma mansoni
cluster # 6964 cluster # 6964 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6964#0 length = 595 sequences # 3

consensus_6964#1 length = 463 sequences # 1

consensusID : consensus_6964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 595
fasta sequence

                              [ACTGAAAGCTATATAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAACTAATTCAGAAGTTTATAAAAACATACACGCACTTTTAAATCGAATATCTATCCCGCTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTATGTAGTGAGTGATGGAAAACGCGGAAAGAACCAGTCCCAAAAACCTTCCTTGATGATTTGGATGAAAAAATGACAAAACGTTTTAGCTTTGAAGTCAGCAAACGAAAACACAATTACAGTGAAGACCTAATAATGACGCACAAACATGAACCCAA]

[+] EMBL CD163457             [ACTGAAAGCTATATAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAACTAATTCAGAAGTTTATAAAAACATACACGCACTTTTAAATCGAATATCTATCCCGCTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTATGTAGTGAGTGATGGAAAACGCGGAAAGAACCAGT                                                                                                                        ]
[-] EMBL CD163507             [                                                                                                                                                                   CATGGGTATGTTCAATGGAAATTTAAGGTCCACGACAAAAGGCAAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTATGTAGTGAGTGATGGAAAACGCGGAAAGAACCAGTCCCAAAAACCTTCCTTGATGATTTGGATGAAAAAATGACAAAACGTTTTAGCTTTGAAGTCAGCAAACGAAAACACAATTACAGTGAAGACCTAATAATGACGCACAAACATGAACCCAA]
[-] EMBL CD192013             [                                                                                                                                                                                                                                                                                  CTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTATGTA                                                                                                                                                       ]




>consensus_6964#0
ACTGAAAGCTATATAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTG
TTAACTAATTCAGAAGTTTATAAAAACATACACGCACTTTTAAATCGAATATCTATCCCG
CTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATT
GAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTA
TGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGA
CTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTC
AACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAG
GCTTGAGCACAGTCTGTTTATGTAGTGAGTGATGGAAAACGCGGAAAGAACCAGTCCCAA
AAACCTTCCTTGATGATTTGGATGAAAAAATGACAAAACGTTTTAGCTTTGAAGTCAGCA
AACGAAAACACAATTACAGTGAAGACCTAATAATGACGCACAAACATGAACCCAA

consensusID : consensus_6964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [AATCGGTAGATCATCCAAATACATTTGATACCAATATTGTTGCTCGATGGCTTTACTGAAAGCTATATAAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAATTTTAAATCGAATATCTATCCCGCTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTAT]

[+] EMBL CD119930             [AATCGGTAGATCATCCAAATACATTTGATACCAATATTGTTGCTCGATGGCTTTACTGAAAGCTATATAAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAATTTTAAATCGAATATCTATCCCGCTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTAT]




>consensus_6964#1
AATCGGTAGATCATCCAAATACATTTGATACCAATATTGTTGCTCGATGGCTTTACTGAA
AGCTATATAAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAAT
TTTAAATCGAATATCTATCCCGCTATACTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAG
AGTTTCATGGGTATGTTCAATTGAAATTTTAGGTCCACGACAAAAGGGCAAGGTAAAGTA
TCCGTAAGTTTCTTGACGATTATGGTATGGTCCAATGGTGTTCATCCATAGAACCACTTC
TTCTGCAACATCATACACATGACTATGTTCATCGGGAAACACGCCACTTAAAACAGTAGA
TACAAACACAATCAGCAACCTCAACATTACAGAGTGAATCTTGGGTGGCTAGGAATATTC
TGCAGCGTCTAATCGTCAATAGGCTTGAGCACAGTCTGTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6964#0      ------------------------------------------------------ACTGAA 6
consensus_6964#1      AATCGGTAGATCATCCAAATACATTTGATACCAATATTGTTGCTCGATGGCTTTACTGAA 60
                                                                            ******

consensus_6964#0      AGCTATATA-GCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAAC 65
consensus_6964#1      AGCTATATAAGCATCTGAATTGACATCAACTTCACACATCGTTGATTTAGGTTTGTTAA- 119
                      ********* ************************************************* 

consensus_6964#0      TAATTCAGAAGTTTATAAAAACATACACGCACTTTTAAATCGAATATCTATCCCGCTATA 125
consensus_6964#1      --------------------------------TTTTAAATCGAATATCTATCCCGCTATA 147
                                                      ****************************

consensus_6964#0      CTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAAT 185
consensus_6964#1      CTGAAGTTCTGTCCCCTGTAAAGCTTCACCCAGAGTTTCATGGGTATGTTCAATTGAAAT 207
                      ************************************************************

consensus_6964#0      TTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTA 245
consensus_6964#1      TTTAGGTCCACGACAAAAGGGCAAGGTAAAGTATCCGTAAGTTTCTTGACGATTATGGTA 267
                      ************************************************************

consensus_6964#0      TGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATG 305
consensus_6964#1      TGGTCCAATGGTGTTCATCCATAGAACCACTTCTTCTGCAACATCATACACATGACTATG 327
                      ************************************************************

consensus_6964#0      TTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACAT 365
consensus_6964#1      TTCATCGGGAAACACGCCACTTAAAACAGTAGATACAAACACAATCAGCAACCTCAACAT 387
                      ************************************************************

consensus_6964#0      TACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTG 425
consensus_6964#1      TACAGAGTGAATCTTGGGTGGCTAGGAATATTCTGCAGCGTCTAATCGTCAATAGGCTTG 447
                      ************************************************************

consensus_6964#0      AGCACAGTCTGTTTATGTAGTGAGTGATGGAAAACGCGGAAAGAACCAGTCCCAAAAACC 485
consensus_6964#1      AGCACAGTCTGTTTAT-------------------------------------------- 463
                      ****************                                            

consensus_6964#0      TTCCTTGATGATTTGGATGAAAAAATGACAAAACGTTTTAGCTTTGAAGTCAGCAAACGA 545
consensus_6964#1      ------------------------------------------------------------
                                                                                  

consensus_6964#0      AAACACAATTACAGTGAAGACCTAATAATGACGCACAAACATGAACCCAA 595
consensus_6964#1      --------------------------------------------------