cluster # 6965

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Schistosoma mansoni
cluster # 6965 cluster # 6965 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6965#0 length = 535 sequences # 1

consensus_6965#1 length = 376 sequences # 3

consensusID : consensus_6965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTCTAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCACTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTCTGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATATGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTCTACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAACGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATTGCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAACTGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA]

[+] EMBL CD087505             [GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTCTAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCACTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTCTGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATATGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTCTACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAACGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATTGCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAACTGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA]




>consensus_6965#0
GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTC
TAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCA
CTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTC
TGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATA
TGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTC
TACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAA
CGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATT
GCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAAC
TGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA

consensusID : consensus_6965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 376
fasta sequence

                              [AAAGGAAGGTTGAACTCTGTGAGTTGCATACA-CACAACACAAAGAAGTTA-CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA-CGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATTTCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAACAGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA]

[-] EMBL CD113799             [AAAGGAAGGTTGAACTCTGTGAGTTGCATACANCACAACACAAAGAAGTTATCTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAACCGAAGGCCTCAAAGAGGTCCG                                                                                                                                                                                                                                                                  ]
[+] EMBL CD113811             [               cCTGTG   TG ATACA CACAACACAAAGAAGTTA CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA CGAATGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATTTCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAACAGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA]
[+] EMBL CD113782             [                     tgtgtgATACA CACAA ACAAAGAAGTTA CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA CGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTTTCCTAACTGCTCTGTGAGAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTCTATA                                                                                                                                 ]




>consensus_6965#1
AAAGGAAGGTTGAACTCTGTGAGTTGCATACACACAACACAAAGAAGTTACTGAGAAATC
TTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAACGAAGGCCTCAAAGAGGTCCGAA
TATCCACTGGCAGGCTTCACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTT
AAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGT
TTGTATACGAAGATATTTCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTT
GCAAATTCCAGAAAAACAGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGT
GAGTTGAATACACACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6965#0      GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTC 60
consensus_6965#1      ------------------------------------------------------------
                                                                                  

consensus_6965#0      TAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCA 120
consensus_6965#1      ------------------------------------------------------------
                                                                                  

consensus_6965#0      CTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTC 180
consensus_6965#1      -------------------------------------------AAAGGAAGGTTGAACTC 17
                                                                 *********** *****

consensus_6965#0      TGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATA 240
consensus_6965#1      TGTGAGTTGCATACACACAACACAAAGAAGTTACTGAGAAATCTTCTGTCCAGCATAATA 77
                      ** *****  ** ****** **** ******* *** *** ********* **  * ***

consensus_6965#0      TGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTC 300
consensus_6965#1      TGAAGAAATCCCGTTTCCAACGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTT 137
                      ******************** ************ * * ** *** *  *** ****  * 

consensus_6965#0      TACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAA 360
consensus_6965#1      CACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAA 197
                       ***** ******* ** ****** *** * ********* ******** **********

consensus_6965#0      CGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATT 420
consensus_6965#1      CGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATT 257
                      ****************  *************************** * ************

consensus_6965#0      GCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAAC 480
consensus_6965#1      TCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAAC 317
                       ******* ***** *  ******  *    **** ***** ** ****** * * ****

consensus_6965#0      TGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA---- 535
consensus_6965#1      AGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA 376
                       * ***** *   ****** *  ******   *******************   *