These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTCTAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCACTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTCTGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATATGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTCTACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAACGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATTGCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAACTGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA] [+] EMBL CD087505 [GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTCTAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCACTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTCTGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATATGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTCTACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAACGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATTGCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAACTGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA] consensusID : consensus_6965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 376 fasta sequence [AAAGGAAGGTTGAACTCTGTGAGTTGCATACA-CACAACACAAAGAAGTTA-CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA-CGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATTTCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAACAGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA] [-] EMBL CD113799 [AAAGGAAGGTTGAACTCTGTGAGTTGCATACANCACAACACAAAGAAGTTATCTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAACCGAAGGCCTCAAAGAGGTCCG ] [+] EMBL CD113811 [ cCTGTG TG ATACA CACAACACAAAGAAGTTA CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA CGAATGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATTTCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAACAGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA] [+] EMBL CD113782 [ tgtgtgATACA CACAA ACAAAGAAGTTA CTGAGAAATCTTCTGTCCAGCATAATATGAAGAAATCCCGTTTCCAA CGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTTCACAAACAGAGTGTTTCCTAACTGCTCTGTGAGAAGAAAGGTTAAACTCTGTGAGTTGAACGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTCTATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6965#0 GGTTAAACTCTGTAAGCTGAATGCGCACATCACAAAGTAGCTTCAGAGAACAATTATGTC 60 consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 TAGTTTTTCTGAGAAGATATTTTCTCTTCTACATAGGCCTGAAACCGCTCTAAATATTCA 120 consensus_6965#1 ------------------------------------------------------------ consensus_6965#0 CTTGGAAATTCTACAAAAAGAATATTTCAACCCTCTTCTATCAAAAGGAAGGTTTAACTC 180 consensus_6965#1 -------------------------------------------AAAGGAAGGTTGAACTC 17 *********** ***** consensus_6965#0 TGAGAGTTAAATGCACACATCACAGAGAAGTTTCTGGGAATTCTTCTGTCAAGGTTTATA 240 consensus_6965#1 TGTGAGTTGCATACACACAACACAAAGAAGTTACTGAGAAATCTTCTGTCCAGCATAATA 77 ** ***** ** ****** **** ******* *** *** ********* ** * *** consensus_6965#0 TGAAGAAATCCCGTTTCCAATGAAGGCCTCAAAAAAGCCCAAATGTTTACTTGCAGATTC 300 consensus_6965#1 TGAAGAAATCCCGTTTCCAACGAAGGCCTCAAAGAGGTCCGAATATCCACTGGCAGGCTT 137 ******************** ************ * * ** *** * *** **** * consensus_6965#0 TACAAAAAGAGTGTTTCATAACTGGTCTATCAAAAGAAAGATTAAACTCCGTGAGTTGAA 360 consensus_6965#1 CACAAACAGAGTGTATCCTAACTGCTCTGTGAAAAGAAAGGTTAAACTCTGTGAGTTGAA 197 ***** ******* ** ****** *** * ********* ******** ********** consensus_6965#0 CGCACACATCACAAAGTTGTTTCTGAGAATCATTCTGTCTAGTTTTTCTACGAAGATATT 420 consensus_6965#1 CGCACACATCACAAAGGAGTTTCTGAGAATCATTCTGTCTAGTTTGTATACGAAGATATT 257 **************** *************************** * ************ consensus_6965#0 GCCTTTTCCACCATAGGCCTCAAACGGCGCTAAATATCCACCTGGAAATTCTACAGAAAC 480 consensus_6965#1 TCCTTTTCTACCATTGAGCTCAAAGCGGCTGAAATCTCCACTTGCAAATTCCAGAAAAAC 317 ******* ***** * ****** * **** ***** ** ****** * * **** consensus_6965#0 TGAGTTTCAAAAGTGCTCTATTGAAAGGAAGCTTCAACTCTGTGAGTTGAAAGTA---- 535 consensus_6965#1 AGTGTTTCCAGTCTGCTCTGTGTAAAGGATCGTTCAACTCTGTGAGTTGAATACACACA 376 * ***** * ****** * ****** ******************* * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||