These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 421 fasta sequence [TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA] [+] EMBL CD135322 [TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTGGCATGTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCCCAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAA ] [+] EMBL CD156545 [ CATATTATGCGTATATATATATATATATCTTGTTGAGTATTCACTGGCCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA] [-] EMBL BG931633 [ ATTATATCCAGAGTCTAAATCAAAAAGCATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCTAGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAAAGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGTCGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGAC ] consensusID : consensus_6969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCGCTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACCATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCTATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTGAGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGTCGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA] [+] EMBL CD156555 [ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCGCTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACCATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCTATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTGAGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGTCGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATGTTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCTGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6969#0 TTCTACTTTGAATAGCATATTATGCGTATATGTATATATATATCTT--GTTGAGTATTCA 58 consensus_6969#1 ---------------ACTATTATGCCTTTATATATATTTATATCTTTGATGCAGTATTCG 45 ******** * *** ***** ******** * ******* consensus_6969#0 CTGG--CCAGAATGCAATGTCCGATTGAAGGCATTATATCCAGAGTCTAAATCAAAAAGC 116 consensus_6969#1 CTGTACTCTAACTGCAATGGGCTATTGTACGCATTATATGCACAACCTGTGTCTGAAACC 105 *** * * ******* * **** * ********* ** * ** ** *** * consensus_6969#0 ATCTGTCGTACTTCAGCTTCAGATAATTCATCAGATGCTTGCATTTGATCCATTTTGTCT 176 consensus_6969#1 ATATGGCGTACTTGAACTCCAAAGAACTCATCCTATGCTCGGATTCGATCCATTTTGTCT 165 ** ** ******* * ** ** * ** ***** ***** * *** ************** consensus_6969#0 AGCCAAGCTTTCACTCTATCTTTACCCTCAAAATCTGAAGGCAGAATACTCAACCGATAA 236 consensus_6969#1 ATCCTAACTATCACTCTATCTTTACCCTGATAGTCTGAAGGCATAGTACTCACCCGATTG 225 * ** * ** ****************** * * ********** * ****** ***** consensus_6969#0 AGAGTTTCATACAGTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCGAATATCTAGT 296 consensus_6969#1 AGAGTTTGATACATTTCTCGAAGATCTGGATGGATTTCATCCACTGCGCTAATATATAGT 285 ******* ***** *********************************** ***** **** consensus_6969#0 CGCAGCTTATCCATAATCGTAATAAACAAGGAAACAGTATCAGCGATACTTTTATTTATG 356 consensus_6969#1 CGGATCTCATCCATAATCGGAGTAAACAAGGAAACAGTATCACCGATACTTTTATTTATG 345 ** * ** *********** * ******************** ***************** consensus_6969#0 TTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCT 416 consensus_6969#1 TTCTGTTTATCATCCTTGATGGTTATCGGTCTTCCTTCCTTAATACGCTCTAGAGCTGCT 405 ************************************************************ consensus_6969#0 GGACA 421 consensus_6969#1 GGACA 410 ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||