cluster # 697

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Schistosoma mansoni
cluster # 697 cluster # 697 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_697#0 length = 297 sequences # 1

consensus_697#1 length = 271 sequences # 1

consensusID : consensus_697#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 297
fasta sequence

                              [GATTATTTTATTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGGGGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCCCACTCAAT]

[+] EMBL CD193328             [GATTATTTTATTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGGGGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCCCACTCAAT]




>consensus_697#0
GATTATTTTATTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGAC
ATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTT
TCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGA
ACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGGGGATAACAGCG
ATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCCCACTCAAT

consensusID : consensus_697#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGTTGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGT]

[-] EMBL CD158201             [CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGTTGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATTGGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAATTAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGAACGGTCCTCGAACATGATCCACCCAAAGAGT]




>consensus_697#1
CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGT
TGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATT
GGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAAT
TAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGA
ACGGTCCTCGAACATGATCCACCCAAAGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_697#0      ------------------------------------------------------------
consensus_697#1      CCCACCATAGAGGACTGAAAAGACTGGGGCGAATAAGGTCACTGTTATACTTTAGTTCGT 60
                                                                                 

consensus_697#0      ---------GATTATTTTA--TTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATT 49
consensus_697#1      TGGGAAAGAGACCAGAGGAGACTAGAATAATCTCTCTAACCAAACACTGGGCAGAATATT 120
                              **  *    *   **************************************

consensus_697#0      GGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAAT 109
consensus_697#1      GGACCTCAGACATCCATGCTGGATACTGATTACCGTTTAGCAAAATAAAGCGACTCCAAT 180
                     ************************************************************

consensus_697#0      TAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGA 169
consensus_697#1      TAACAGCTTTTTCAAAAGAGTAATCAGTTTTCACAGAAAGCCCAAGAGCTTGAGGTAGGA 240
                     ************************************************************

consensus_697#0      ACGGTCCTCGAACATGATCCACCCAAAGAGTTTCACCATCTACCAAACCAAGACATAAGG 229
consensus_697#1      ACGGTCCTCGAACATGATCCACCCAAAGAGT----------------------------- 271
                     *******************************                             

consensus_697#0      GGATAACAGCGATTAGATCTGGGTATTTTGAAAACAAATGCGCACGTTGTGATATGCCCC 289
consensus_697#1      ------------------------------------------------------------
                                                                                 

consensus_697#0      CACTCAAT 297
consensus_697#1      --------