These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTATCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATACCATAACTGTGAATGCAGAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAACTC] [+] EMBL BF936742 [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTATCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATACCATAACTGTGAATGCAGAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAACTC] [+] EMBL AI975239 [CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGGTAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATAACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAAGAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAAAACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATGCAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATATTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCAAGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTATCTGGACGAAGAAACGGATCTCTCCGGTGACAATGGTCAACGTATATACATAACTGTGAATG AAGTGGACCGAA TCACATCACC ] consensusID : consensus_6975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 430 fasta sequence [CCAACGNATGTCGAATAGGTAGGTGGATCGAGTTCATATCATAATCGATATTTTCCATCACGATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCCTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACTCTAC] [+] EMBL CD127425 [CCAACGNATGTCGAATAGGTAGGTGGATCGAGTTCATATCATAATCGATATTTTCCATCACGATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCCTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACT ] [-] EMBL CD127655 [ ATTTTCTGGACGAAGAAACGGATCATTGAGTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCAAGTAGACCGAATTCACATCAACATCCTTTGTTTCCACCACGATTATCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTACATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTGTCTGGAGGAAGAAACGGATCATTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTATCTTCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTACTCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6975#0 CATGTACTTGTTACGATATTTTATATGTAAAATAAAAGGTCAACTCGACAAATTGGAAGG 60 consensus_6975#1 ------------------------------------------------------------ consensus_6975#0 TAAACAAAGATAATAATAATAATAAAGTGGACGAAAACTATGTAAACACCACACTGGATA 120 consensus_6975#1 ------------------------------------------------------------ consensus_6975#0 ACAAATCAGTATTACCAGGATAGGTTAAGAGTAAGAACAAATTGTTTTTGAACATATAAA 180 consensus_6975#1 ------------------------------------------------------------ consensus_6975#0 GAATGTTTCAGTTTTCGTATATCTAAGGCTTTAATGTAAGTAAAAGAGAAATCGATTGAA 240 consensus_6975#1 ------------------------------------------------------------ consensus_6975#0 AACTTCGAAAATATTAAAAGTGCATCAATTATTCGAAATCAAAAATCAAGTAGCATTATG 300 consensus_6975#1 ----------------------------CCAACGNATGTCGAA---TAGGTAGGTGGATC 29 * * ** ** * **** ** consensus_6975#0 CAGTTCAACCAAGAAGTACATATAAACATGACTAAAATATACAAAAAATACAATCAAATA 360 consensus_6975#1 GAGTTCATATCATAATCG---ATATTTTCCATCACGATTTTCTGGACGAAGAAACGGAT- 85 ****** * ** *** * * ** * * * * ** * ** consensus_6975#0 TTAATTGAACATGGTCTCTTCGGTGAGAATGGTCCACATATACACATAACGTTCAAGGCA 420 consensus_6975#1 --CATTGA--GTGGTCTCTCCGGTGACAATGGTCCACGTATATATACAACTGTGAATGCA 141 ***** ******** ****** ********** **** * * *** * ** *** consensus_6975#0 AGTGAACTAAATTCACATCACTATCAAAATGTACAGCATAGTAATTTTCCACCACGATTA 480 consensus_6975#1 AGTAGACCGAATTCACATCAACATC-----------CTTTGT----TTCCACCACGATTA 186 *** ** *********** *** * * ** ************** consensus_6975#0 TCTGGACGAAGAAACGGATC-----------TCTCCGGTGACAATGGTCAACGTATATAC 529 consensus_6975#1 TCTGGACGAAGAAACGGATCATTGAGTGGAATGTCCGGTGAAAGTGGTCCACGTGTGTAC 246 ******************** * ******** * ***** **** * *** consensus_6975#0 ATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCAATATTTTCCACCACATTTA 589 consensus_6975#1 ATAACTGTGAATGCAAGTGGACCGAATTCACATCACCATCCCTTTTTTCCACCACAATTG 306 **************************************** * ************ ** consensus_6975#0 TCTGGACGAAGATACGGTTCAATGGAGTGGTTTCTCCAGTGAAAATGGTCAACATATATA 649 consensus_6975#1 TCTGGAGGAAGAAACGGATCA-TTGAGTGGAATGTCTGGTGAAAATGGTCCTGGTAT-CC 364 ****** ***** **** *** * ****** * ** ************ *** consensus_6975#0 CCATAACTGTGAATGCA---GAATGGGGTCCCAGTTCCTATCACAATAGATATTTTCCAA 706 consensus_6975#1 TCATAACCGTCAACTCAAGTGGACAGAGTTCAATTTACCGTCGTCAGAAACAAGGCGTTA 424 ****** ** ** ** * * * ** * * ** * ** * * * * * consensus_6975#0 CTC--- 709 consensus_6975#1 CTCTAC 430 *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||