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Schistosoma mansoni
cluster # 6976 cluster # 6976       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6976#0 length = 709 sequences # 2  
consensus_6976#1 length = 421 sequences # 2  

consensusID : consensus_6976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 709
fasta sequence
                              [CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT]

[+] EMBL CD201550             [CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCA                                                                                                                                                                                                      ]
[+] EMBL BF936085             [                                                                                                                                                                                                                                    AGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATTTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT]


>consensus_6976#0 CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCC ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC ATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATAT AAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCT AAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCAC TGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGT TGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGC TTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGA CACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTAC AATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCA AATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCA TTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT



consensusID : consensus_6976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 421
fasta sequence
                              [CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG]

[+] EMBL CD152477             [CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACT                                                                                                                                                                                                                                                                      ]
[+] EMBL CD195423             [                    TGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAGGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG]


>consensus_6976#1 CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCA CAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTG CTGACATCCATAAAATCTGTGAATATAAACATCACGACTCGGATTTGTCGGTTATCGGAA TCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGA AGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCT AGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATAC GCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAA G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6976#0      CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCC 60
consensus_6976#1      ------------------------------CTTTTAA----CTTGCATGTCAATTGAGCC 26
                                                    **   *      * ****************

consensus_6976#0      ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 120
consensus_6976#1      ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 86
                      ************************************************************

consensus_6976#0      ATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATAT 180
consensus_6976#1      ATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATAT 146
                      *************************** ********************************

consensus_6976#0      AAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCT 240
consensus_6976#1      AAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTC-----TCT 201
                      ******** ***************   ***   *      *  *   ***       ***

consensus_6976#0      AAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCAC 300
consensus_6976#1      ACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGT 261
                      *  *  **  *   ** **   * *  * **      ***   * * *  *      *  

consensus_6976#0      TGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGT 360
consensus_6976#1      CAATGT----TTATCAGTAATGAAGTCGTGGATGAAAAT---ATCT--AGCTTTAAC--- 309
                        ** *    *   ** ** ****    *   * * ***   ***   * *  * **   

consensus_6976#0      TGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGC 420
consensus_6976#1      TAGAAAATTTGATGTTAATGTTTCACTATA-------AACTAATAATTGTTATCATACGC 362
                      *  ** * ****   *  *** * * ***        ***  **   ** * ** *  **

consensus_6976#0      TT-CCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAG 479
consensus_6976#1      AGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGT-TGGTCTAAAACTACCAAG 421
                         ** *           ****  *   * *     * * * *** * ***   * ****

consensus_6976#0      ACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTA 539
consensus_6976#1      ------------------------------------------------------------
                                                                                  

consensus_6976#0      CAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGC 599
consensus_6976#1      ------------------------------------------------------------
                                                                                  

consensus_6976#0      AAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCC 659
consensus_6976#1      ------------------------------------------------------------
                                                                                  

consensus_6976#0      ATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT 709
consensus_6976#1      --------------------------------------------------
                                                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)