These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT] [+] EMBL CD201550 [CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCA ] [+] EMBL BF936085 [ AGATGTTGGTCTAAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCACTGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGTTGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGCTTCCGCTGGGGATGCAGATACTCCAGATTTCATTTGTTATGTGGCCAAAACAGATCAAGACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTACAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGCAAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCCATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT] consensusID : consensus_6976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 421 fasta sequence [CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG] [+] EMBL CD152477 [CTTTTAACTTGCATGTCAATTGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCACGACT ] [+] EMBL CD195423 [ TGAGCCACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAACATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATATAAACATCAGGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTCTCTACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGTCAATGTTTATCAGTAATGAAGTCGTGGATGAAAATATCTAGCTTTAACTAGAAAATTTGATGTTAATGTTTCACTATAAACTAATAATTGTTATCATACGCAGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGTTGGTCTAAAACTACCAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6976#0 CTTTTAACTTGGTATGCTGTGTTTTGTGGCCTAACAGGGTTTTAGCATGTCAATTGAGCC 60 consensus_6976#1 ------------------------------CTTTTAA----CTTGCATGTCAATTGAGCC 26 ** * * **************** consensus_6976#0 ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 120 consensus_6976#1 ACAAAGGTCACAGCAATGGCTTCATCATGATTCACAACTGGCTGCTGATGCTGGGGTAAC 86 ************************************************************ consensus_6976#0 ATTCGAGCTTCAATATGTTGGTGCCATCCCAGTGCTGACATCCATAAAATCTGTGAATAT 180 consensus_6976#1 ATTCGAGCTTCAATATGTTGGTGCCATACCAGTGCTGACATCCATAAAATCTGTGAATAT 146 *************************** ******************************** consensus_6976#0 AAACATCAAGACTCGGATTTGTCGTGCATCAATACGTCGTGTATGCGAAGATGTTGGTCT 240 consensus_6976#1 AAACATCACGACTCGGATTTGTCGGTTATCGGAATCCTAAGCCTAACAAGTC-----TCT 201 ******** *************** *** * * * *** *** consensus_6976#0 AAAACTACCAAGTAACCGATCAGCTGACAAGTCAATAGAACAGTTCATTGGCCCATCCAC 300 consensus_6976#1 ACGAACACGGAAGGACTGAGTGGGTTTCCAGCTGGATGAAGGTTGCCTCTGAAATCACGT 261 * * ** * ** ** * * * ** *** * * * * * consensus_6976#0 TGATATGACATGGGCAATAGTGAATGTATACCTTACAATCACATCACAAACACTCACCGT 360 consensus_6976#1 CAATGT----TTATCAGTAATGAAGTCGTGGATGAAAAT---ATCT--AGCTTTAAC--- 309 ** * * ** ** **** * * * *** *** * * * ** consensus_6976#0 TGAAACAATTGACAATGGTGTGTTATTATTCCAGCACAACCTATTCCTGGTTTCTTTTGC 420 consensus_6976#1 TAGAAAATTTGATGTTAATGTTTCACTATA-------AACTAATAATTGTTATCATACGC 362 * ** * **** * *** * * *** *** ** ** * ** * ** consensus_6976#0 TT-CCGCTGGGGATGCAGATACTCCAGATNTCATTTGTTATGTGGCCAAAACAGATCAAG 479 consensus_6976#1 AGACCTCCACATGCATCAATACGTCGTGTATGCGAAGATGT-TGGTCTAAAACTACCAAG 421 ** * **** * * * * * * *** * *** * **** consensus_6976#0 ACACTCGTATGTGTTACGTTTTTGAATGTTCAGATGGTCTTGCCCAGGATGTAATTATTA 539 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 CAATCGGGCAAGCATTCCAGTTAGGATATCAGGTGAATATTAACACGAATTCACATCTGC 599 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 AAATTGTCATGGGATTTAAAAAATTCTAAACCACAAATTGTTGATAACCAAACATCTTCC 659 consensus_6976#1 ------------------------------------------------------------ consensus_6976#0 ATTAAACTAAATTCATTGGATTCATTATTTTCTAATCATCAAACAAATAT 709 consensus_6976#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||