cluster # 6977

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Schistosoma mansoni
cluster # 6977 cluster # 6977 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6977#0 length = 439 sequences # 3

consensus_6977#1 length = 143 sequences # 1

consensusID : consensus_6977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 439
fasta sequence

                              [TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTGTGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAACAAGTTAATTTCATGTTTC]

[+] EMBL AW017158             [TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTGTGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAACAAGTTAATTTCATGTTTC]
[+] EMBL AA566171             [                                  ACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCNCNCNCTCATATATATATAGTC                                                                                                                                                                                                                                                                                 ]
[+] EMBL SMAA18506            [                                                     TTAAAACAAACCATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTATCTCTC ATCTCTGTCGCTCTATATCtcnc                                                                                                          ]




>consensus_6977#0
TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAAC
AAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACA
ATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCAT
TTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGAT
TTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCT
CTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTG
TGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAA
CAAGTTAATTTCATGTTTC

consensusID : consensus_6977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [ATAATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACGATAATATTTATAATAAACATTCCTCTGGTGTAAAAAAGTTTGTTTTTTG]

[+] EMBL SMAA69232            [ATAATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACGATAATATTTATAATAAACATTCCTCTGGTGTAAAAAAGTTTGTTTTTTG]




>consensus_6977#1
ATAATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAA
GGCCATTGATACTAACTAAACGGGATCTACAACGATAATATTTATAATAAACATTCCTCT
GGTGTAAAAAAGTTTGTTTTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6977#0      TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAAC 60
consensus_6977#1      --------------------------ATAATTTTACAATTCATTGTTGATTAATTAAAAC 34
                                                ** *******************************

consensus_6977#0      AAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACA 120
consensus_6977#1      AAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACG 94
                      **************************  ******************* *********** 

consensus_6977#0      ATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCAT 180
consensus_6977#1      ATAATATTTATAATAAACATTC-CTCTGGTGTAAAAAAGTTTGTTTTTTG---------- 143
                      ********************** ****     * * *       * * **          

consensus_6977#0      TTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGAT 240
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      TTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCT 300
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      CTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTG 360
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      TGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAA 420
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      CAAGTTAATTTCATGTTTC 439
consensus_6977#1      -------------------