These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6980#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 748 fasta sequence [TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGGACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCATAAATCAAAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTTTATTCGATTGAATCCCATTTCGTGTAATATTTTACAAACGTCATCACTGTGTTAAAGGATATGAGATTAAAAATCACCTTGTTTGATAATTCATCTGAATGAAATTTCATTCATTTGGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTGCTTAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTATCTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGCACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAGCTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT] [-] EMBL CD131926 [TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGGACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCATAAATCAAAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGA ] [-] EMBL CD131929 [ TTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGATTACTTCACTGTTTAATATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGTCTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAc ] [+] EMBL CD165752 [ AAATCTTCCACATCATTTTCTGTCTCAGAACTGTGTGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGAACCATTTTTCCTTTTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTTTATTCGATTGAATCCCATTTCGTGTAATATTTTACAAACGTCATCACTGTGTTAAAGGATATGAGATTAAAAATCACCTTGTTTGATAATTCATCTGAATGAAATTTCATTCATTTGGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTGCTTAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTATCTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGCACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAGCTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT] consensusID : consensus_6980#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [GACAAATCATAAAGGACCTTTTCTGTGTCGGTGAAATTACAATTTATGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAGAATGTCCATCTACTAGGACTAAATGAGAGCGATAAACCAGTGTGAGGAATTAGAATTATGATTTACAGTTGATGGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTGGCATTAGCTGAAACTCCAGAACGTCATTTAGCCAAACAGATGAATGAATTTCGCACCAGAATACAAGACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGATAAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTATCATTTCCACTAGTAATGCTTACTAGAGAACGTTTTCTCAAAAAAACTTTTAAGAAACGAAAACTGTTATGACAAATTACTACAAATGAATGTTGATGAAATTGATTCCCAATAAATAATTTCATA] [+] EMBL CD087641 [GACAAATCATAAAGGACCTTTTCTGTGTCGGTGAAATTACAATTTATGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAGAATGTCCATCTACTAGGACTAAATGAGAGCGATAAACCAGTGTGAGGAATTAGAATTATGATTTACAGTTGATGGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTGGCATTAGCTGAAACTCCAGAACGTCATTTAGCCAAACAGATGAATGAATTTCGCACCAGAATACAAGACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGATAAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTATCATTTCCACTAGTAATGCTTACTAGAGAACGTTTTCTCAAAAAAACTTTTAAGAAACGAAAACTGTTATGACAAATTACTACAAATGAATGTTGATGAAATTGATTCCCAATAAATAATTTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6980#0 TAACCATCAACTGTAAATCATAATTCTAATTCCTCATACTGGTTTATAACCTTCATTTGG 60 consensus_6980#1 -----------GACAAATCATAAAGGACCTTTTCTGTGTCGGT--GAAATTACAATTTA- 46 ********* ** * *** ** **** consensus_6980#0 ACCTAGTTACTAGATGGACATGGTTAATCTAGCGTCACTCAAAGGTCGTCCA-TAAATCA 119 consensus_6980#1 ---TGGTCGACATTTGGGGGATGTAAAAGTGACCTTGAG-AATGTCCATCTACTAGGACT 102 * ** * *** ** ** * * * ** * * ** * ** * consensus_6980#0 AAGTCTCACCGAAATTTCTTTTCAAGAAATTGTTTAGAACATACAAAGCTTACCACTGAT 179 consensus_6980#1 AAATGAGAGCGATAAACCAGTGTGAGGAATT----AGAAT---TATGATTTACAGTTGAT 155 ** * * *** * * * ** **** **** * **** **** consensus_6980#0 TACTTCACTGTTTAAT-ATGTTAACATGTCACTCGTTAAATCTTCCACATCATTTTCTGT 238 consensus_6980#1 GGTTAGGGTTAGTAATCAGATTTAGAGTTTTCATAACGAAGTG---GCATTAGCTGAAAC 212 * * **** * ** * * * * ** *** * * consensus_6980#0 CTCAGAACTGTATGTTCTACAGTTGAGCGACGTTGATACGTTATTGTGCTACTATAATGA 298 consensus_6980#1 TCCAGAAC-----GTCATTTAGCCAAACAG-ATGAATGAATT-TCGCACCAGAATACAAG 265 ****** ** * ** * * * ** ** * * * * *** consensus_6980#0 ACCATTTTTCCTT--TTTGATTATTTTATCCACTCGATTGTCCCATATTTTTGCTTTGTT 356 consensus_6980#1 ACCTGTCATCCTAAATCTGATCGGTTTGACCGTAAATTAGAGTCTCGCCTGTGTGTCGAT 325 *** * **** * **** *** ** * * * * ** * * * consensus_6980#0 TATTCGATTGAATCCCATTTCGTGT---AATATTTTACAAACGTCATCACTGTGTTAAAG 413 consensus_6980#1 AAATAAGAAGAACGAATTTTCGCATTAAAATAGCGCACAGAAAATCCAACTCAGTGTTAT 385 * * *** ***** * **** *** * *** ** * consensus_6980#0 GATATGAGATTAAAAATCACCTTGTTTGATAAT-TCATCTGAATGAAATTTCATTCATTT 472 consensus_6980#1 CATTTCC-ACTAGTAATG--CTTACTAGAGAACGTTTTCTCAAAAAAACTT---TTAAGA 439 ** * * ** *** *** * ** ** * *** ** *** ** * * consensus_6980#0 GGTGTAATGCTTTCCGATTATCTCAAGTCAAGTCTAATGGTTTGGCAATGAAACATCTTG 532 consensus_6980#1 AACGAAAA------CTGTTATGACAAATTACTACAAATGAAT-GTTGATGAAATTGATTC 492 * ** * **** *** * * * **** * * ****** ** consensus_6980#0 CT--TAAATAATTTCTTTTAAATTATCCTAACAGAACTATTTAAATTGTCTAATTATTAT 590 consensus_6980#1 CCAATAAATAATTTCATA------------------------------------------ 510 * *********** * consensus_6980#0 CTTTTTTCTTCATTGTCTTCAGAAATAGTCAGGCTGTAAATTTCGATTCTCGTGAAATGC 650 consensus_6980#1 ------------------------------------------------------------ consensus_6980#0 ACATGGCCGTTCAACAAGAATTACGACTCCGTAATCGTACCATTCATACTGCTGCTTCAG 710 consensus_6980#1 ------------------------------------------------------------ consensus_6980#0 CTTCTGGTGGGTCCATTTCTTCAATTAGTTCGGCTGAT 748 consensus_6980#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||