These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGAAAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGTAAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAATAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGATTAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTNTAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAACTGTGGG] [+] EMBL SM7321 [CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGAAAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGTAAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAATAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGATTAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTNTAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAACTGTGGG] consensusID : consensus_6981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 334 fasta sequence [AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAATAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGATTAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCA-TCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAGATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA] [+] EMBL AA566203 [AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAATAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGATTAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCA TCTGGAGATCA ] [+] EMBL SM527 [ TAATGAATATAATAATAATTTAATCATAAATATAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAACTGTTGATCATCCATTCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAGATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA] consensusID : consensus_6981#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTACCTCATCATAATCTGTTTTTTTATCAAGATAATTCTTTCCATTGT] [+] EMBL AI977358 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTACCTCATCATAATCTGTTTTTTTATCAAGATAATTCTTTCCATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6981#0 CGAGTAAAGAGTAACGATAAAGNAACGTCATGAGGAATATGGTAAAGATCAATATTATGA 60 consensus_6981#1 ------------------------------------------------------------ consensus_6981#2 ------------------------------------------------------------ consensus_6981#0 AAAATCAAAACCTGACAATGGAAAGAATTATCTTGATAAAAAANCAGATTATGATGAGGT 120 consensus_6981#1 ------------------------------------------------------------ consensus_6981#2 ------------------------------------------------------------ consensus_6981#0 AAAAAATAAAAAAATCCCAGAAAAGAAAAAAGCTAANTCAGAAGAGAAAAGTGAAGAGAA 180 consensus_6981#1 -----------------------AGAAAAAAGCTAAATCAGAAGAGAAAAGTGAAGAGAA 37 consensus_6981#2 ------------------------------------------------------------ consensus_6981#0 TAAAAANCAAGTTGAAAAGGATGTAAAATATCCAAGGGAAGATAATGTNATTAAAGTGAT 240 consensus_6981#1 TAAAAAACAAGTTGAAAAGGATGTAAAATATTCAAGGGAAGATAATGTAATTAAAGTGAT 97 consensus_6981#2 ------------------------------------------------------------ consensus_6981#0 TAATGAATNCTCATAAACATAATTAANGTAATGAATATNATAATACTTTACTCATAANTN 300 consensus_6981#1 TAATGAATACTCATAAACATAATTAAAGTAATGAATATAATAATAATTTAATCATAAATA 157 consensus_6981#2 -------TACGCAGTACGGTAATGCAGCT-----GCATGGCA-TGTTTTTTTTTTTTTTT 47 * * ** * **** * * ** * * *** * * * consensus_6981#0 TAGTAATTTANNGTAATAGTAATAATAACATGATTATCTANTTATGANTCTTNNATGAAC 360 consensus_6981#1 TAGTAATTTAATGTAATAGTAATAATAACATGATTATCTAATTATGATTCTTTTATGAAC 217 consensus_6981#2 TTTTTTTTTATTTTTTACCTCATCATAATCTG-TTTTTTTATCAAGATAATTCTTTCCAT 106 * * **** * * ** **** ** ** * * * * ** ** * * consensus_6981#0 TGTGGG------------------------------------------------------ 366 consensus_6981#1 TGTTGATCATCCATCTGGAGATCAAAAAGAAATTGANTGAATAAAACATTGGCAAAAAAG 277 consensus_6981#2 TGT--------------------------------------------------------- 109 *** consensus_6981#0 --------------------------------------------------------- consensus_6981#1 ATTGATCAANTTTGTAATAAAACCTATTTCTCTTTCTTAAAAAAAACGTCTGTTCAA 334 consensus_6981#2 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||