cluster # 6988

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Schistosoma mansoni
cluster # 6988 cluster # 6988 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6988#0 length = 350 sequences # 3

consensus_6988#1 length = 196 sequences # 1

consensusID : consensus_6988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 350
fasta sequence

                              [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA]

[+] EMBL CD089321             [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCAT                                        ]
[+] EMBL CD089345             [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCAT                                        ]
[-] EMBL CD087706             [                                                                                                                        CCAGCACAGGTTCGTTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA]




>consensus_6988#0
TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCT
GTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCA
CCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCA
GACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACAC
ACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGA
CATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA

consensusID : consensus_6988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 196
fasta sequence

                              [GTCGTNCGGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACACAAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGACATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA]

[-] EMBL CD087727             [GTCGTNCGGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACACAAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGACATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA]




>consensus_6988#1
GTCGTNCGGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTC
CACCACAAACACAAATGTACCNATTACACAAAACAGACTCGACCATCAACACACGTGGAA
CACTCCAGTCAGAACACTCAACACATTGACATACGGCATCACTTGAAATCGACCGTGATA
TCACCTAGTGTATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6988#0      TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCT 60
consensus_6988#1      ------------------------------------------------------------
                                                                                  

consensus_6988#0      GTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCA 120
consensus_6988#1      ------------------------------------------------------------
                                                                                  

consensus_6988#0      CCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCA 180
consensus_6988#1      -------------------------------GTCGTNCGGTCACACTCGTCATACTCTCA 29
                                                      ** * * *********************

consensus_6988#0      GACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACAC 240
consensus_6988#1      GACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACAC 89
                      *********************************************** **** *******

consensus_6988#0      ACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGA 300
consensus_6988#1      AAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGA 149
                      *  ** ******************* ** ********* ******** ************

consensus_6988#0      CATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA 350
consensus_6988#1      CATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA--- 196
                      *********** ******************* ***************