cluster # 6994

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Schistosoma mansoni
cluster # 6994 cluster # 6994 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6994#0 length = 466 sequences # 3

consensus_6994#1 length = 416 sequences # 1

consensusID : consensus_6994#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 466
fasta sequence

                              [GTCGATCTAGAGGATACCCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAGGTACAGTATAAC]

[+] EMBL CD061705             [GTCGATCTAGAGGATACCCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAG            ]
[+] EMBL CD061808             [                 aCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATGAG            ]
[-] EMBL CD061758             [                              GGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGCTACC AAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTAC  TACAATCATGCAGTACAGTATAAC]




>consensus_6994#0
GTCGATCTAGAGGATACCCCATCAACTCTCGGGAATCGAGAGGGAAAGCAGAAATGGTCA
GCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGT
GCTGATTCAGATTAACAAGCGTGTAAATGTTATTTTTAAGAACTACAGAGTCATGATCCT
AAACCTATTGATACAGATATATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGAT
TCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTA
TATCATTACAAATACATTCGTATATGTTTATATGACCTCTTTTACTAGTCATCCGACTGC
TACCAAAAGTTTTTATCTCTCTGAATCTTTCTAACTGATTAGACATTTGATTGTAGAAGG
TCATCCTGAAGTACTGCTACTTTACAATCATGAGGTACAGTATAAC

consensusID : consensus_6994#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTGAAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCTGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG]

[-] EMBL CD200803             [ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTGAAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCTGGAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTATTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCCTCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG]




>consensus_6994#1
ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTG
AAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCTGGA
ATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAGGG
ATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTATT
TTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCCTC
AATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCACA
CGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6994#0      ------------------------------------------------------------
consensus_6994#1      ATGTAATACTGAATGGTGGGAATGTATGCTTAAAAAACGTATCAATAGTTCAATGAATTG 60
                                                                                  

consensus_6994#0      --------------------------GTCGATCTAGAGGATACC--CCATCAACTCTCGG 32
consensus_6994#1      AAACTTTTATTCGCGGTTTTCTAACAGTTTATACACTGAGTAGTATTCGCCGACGCT--G 118
                                                **  **  *  *  **     *  * ** **  *

consensus_6994#0      GAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAG 92
consensus_6994#1      GAATCGAGAGGGAAAGCAGAAATGGTCAGCTTATGGAGTGATAATGGAAAGAATCTCAAG 178
                      ************************************************************

consensus_6994#0      GGATTTTTTACAAACATTACACTCTGGTGCTGATTCAGATTAACAAGCGTGTAAATGTTA 152
consensus_6994#1      GGATTTTTTACAAACATTACACTCTGGTGTTGATTCAGATTAACCAGCGTGTTAGTGTTA 238
                      ***************************** ************** ******* * *****

consensus_6994#0      TTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACAGATATATTTAGGGATCC 212
consensus_6994#1      TTTTTAAGAACTACAGAGTCATGATCCTAAACCTATTGATACCGCCACATTTAGGGATCC 298
                      ****************************************** *  * ************

consensus_6994#0      TCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCA 272
consensus_6994#1      TCAATAATTTTTTTCAGATTGTAATGATTCGGTTGTTTATGAGAATAGGTTTTCAGATCA 358
                      ************************************************************

consensus_6994#0      CACGTTCAACATATATTCGACATAACTATATCATTACAAATACATTCGTATATGTTTATA 332
consensus_6994#1      CACGTTCAACATATATTCGACATAACTATATCATTACAAATACACCAGAGCGGGCCGG-- 416
                      ********************************************   *     *      

consensus_6994#0      TGACCTCTTTTACTAGTCATCCGACTGCTACCAAAAGTTTTTATCTCTCTGAATCTTTCT 392
consensus_6994#1      ------------------------------------------------------------
                                                                                  

consensus_6994#0      AACTGATTAGACATTTGATTGTAGAAGGTCATCCTGAAGTACTGCTACTTTACAATCATG 452
consensus_6994#1      ------------------------------------------------------------
                                                                                  

consensus_6994#0      AGGTACAGTATAAC 466
consensus_6994#1      --------------