cluster # 6997

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6997 cluster # 6997 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6997#0 length = 638 sequences # 3

consensus_6997#1 length = 220 sequences # 1

consensusID : consensus_6997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 638
fasta sequence

                              [CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATCCAAGTCTCTAATCCATTCATCT-AAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCAC-AGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC-TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTTTTTCCTGGTGGTGGGACCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGCGAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTAAGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTATAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG]

[+] EMBL CD158004             [CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATCCAAGTCTCTAATCCATTCATCTAAAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCACAAGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACAACATTTAACTGTATAAGATCCNTTGTGTACATCACTAACAGAATCCACAGAACGTGATCGGNGTTTCCTTTCATTAGACTNCATTCTTACGCGACGTGTCGGGTCGTATACGTAT                                                                                                                                                                                                                                                          ]
[+] EMBL CD199448             [                                                                TCTCTAATCCATTCATCT AAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCAC AGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTANATTGTTTACAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTT                                                                                                                                                                                                                                          ]
[+] EMBL CD127698             [                                                                                                                                                                          ttCTTATGCTTCAC ANAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAAC TTGTTTTTCCTGGTGGTGGGACCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGCGAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTAAGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTATAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG]




>consensus_6997#0
CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATC
CAAGTCTCTAATCCATTCATCTAAAACCACAGTTGTCAACAATGATCCATCACTTAGTCT
GTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTT
CACAGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAA
GTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCCTTGTG
TACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCT
TACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTTTTTCCTGGTGGTGGGA
CCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGC
GAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTA
AGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTA
TAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG

consensusID : consensus_6997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [AGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGTCAGTATCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGTATACCGCACGATCCATTAACCAGAGCAATTACATGAAATGTACGTTATTTGCCATAGTAGGAGATAATATCATACTACTTAACACCTAAGCCGTGTTATCCAGC]

[+] EMBL CD183066             [AGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGTCAGTATCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGTATACCGCACGATCCATTAACCAGAGCAATTACATGAAATGTACGTTATTTGCCATAGTAGGAGATAATATCATACTACTTAACACCTAAGCCGTGTTATCCAGC]




>consensus_6997#1
AGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAA
TAGGTCAGTATCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGTATAC
CGCACGATCCATTAACCAGAGCAATTACATGAAATGTACGTTATTTGCCATAGTAGGAGA
TAATATCATACTACTTAACACCTAAGCCGTGTTATCCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6997#0      CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATC 60
consensus_6997#1      ------------------------------------------------------------
                                                                                  

consensus_6997#0      CAAGTCTCTAATCCATTCATCTAAAACCACAGTTGTCAACAATGATCCATCACTTAGTCT 120
consensus_6997#1      ------------------------------------------------------------
                                                                                  

consensus_6997#0      GTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTT 180
consensus_6997#1      ------------------------------------------------------------
                                                                                  

consensus_6997#0      CACAGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAA 240
consensus_6997#1      ------------------------------------------------------------
                                                                                  

consensus_6997#0      GTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCCTTGTG 300
consensus_6997#1      ------------------------------------------------------------
                                                                                  

consensus_6997#0      TACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCT 360
consensus_6997#1      ------------------------------------------------AGACTTCATTCT 12
                                                                      ************

consensus_6997#0      TACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTTTTTCCTGGTGGTGGGA 420
consensus_6997#1      TACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGT--CAGTA 70
                      *********************************** *  *  ***     ***    * *

consensus_6997#0      CCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGC 480
consensus_6997#1      TCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGT-ATACCGCACGATC 129
                       * ** **     *     * **   *** ** **    **   *  * ***   *   *

consensus_6997#0      GAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTA 540
consensus_6997#1      CATTAACCAGAGCAATTACAT-GAAATGTACGTTATTTGCCATAGTAGGAGATA-ATATC 187
                       *   *** * *   *   ** ** *** *  *   * *   **  *  ** ** ** * 

consensus_6997#0      AGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTA 600
consensus_6997#1      ATACTACTTAACACCTAAGC-CGTGTTATCCAGC-------------------------- 220
                      *    * *      * *  * *  ***  * *                            

consensus_6997#0      TAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG 638
consensus_6997#1      --------------------------------------