These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6997#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 638 fasta sequence [CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATCCAAGTCTCTAATCCATTCATCT-AAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCAC-AGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC-TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTTTTTCCTGGTGGTGGGACCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGCGAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTAAGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTATAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG] [+] EMBL CD158004 [CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATCCAAGTCTCTAATCCATTCATCTAAAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCACAAGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACAACATTTAACTGTATAAGATCCNTTGTGTACATCACTAACAGAATCCACAGAACGTGATCGGNGTTTCCTTTCATTAGACTNCATTCTTACGCGACGTGTCGGGTCGTATACGTAT ] [+] EMBL CD199448 [ TCTCTAATCCATTCATCT AAAACCACAGTTGTCAACAATGATCCATCACTTAGTCTGTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTTCAC AGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTANATTGTTTACAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTT ] [+] EMBL CD127698 [ ttCTTATGCTTCAC ANAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAAGTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCC TTGTGTACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAAC TTGTTTTTCCTGGTGGTGGGACCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGCGAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTAAGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTATAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG] consensusID : consensus_6997#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [AGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGTCAGTATCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGTATACCGCACGATCCATTAACCAGAGCAATTACATGAAATGTACGTTATTTGCCATAGTAGGAGATAATATCATACTACTTAACACCTAAGCCGTGTTATCCAGC] [+] EMBL CD183066 [AGACTTCATTCTTACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGTCAGTATCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGTATACCGCACGATCCATTAACCAGAGCAATTACATGAAATGTACGTTATTTGCCATAGTAGGAGATAATATCATACTACTTAACACCTAAGCCGTGTTATCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6997#0 CTGTTCTAGACAATCCACTATATTTCTTGCTGATTTCGCAATATGATTAGTCGCAGTATC 60 consensus_6997#1 ------------------------------------------------------------ consensus_6997#0 CAAGTCTCTAATCCATTCATCTAAAACCACAGTTGTCAACAATGATCCATCACTTAGTCT 120 consensus_6997#1 ------------------------------------------------------------ consensus_6997#0 GTCTTCAAAACCCTTGTTCTTTCCTGCGATATAGGTAGGCTTAATTGTTTCCTTATGCTT 180 consensus_6997#1 ------------------------------------------------------------ consensus_6997#0 CACAGAACTATATGGTTGCTCTTGCATCGAAATAGTATCATGGGAACTAAATTGTTTAAA 240 consensus_6997#1 ------------------------------------------------------------ consensus_6997#0 GTGCTGGTCTTGTGGCTCTTTATCAGATTCCACATCATTTAACTGTATAAGATCCTTGTG 300 consensus_6997#1 ------------------------------------------------------------ consensus_6997#0 TACATCACTAACAGATTCCACAGAACGTGATCGGGGTTTCCTTTCATTAGACTTCATTCT 360 consensus_6997#1 ------------------------------------------------AGACTTCATTCT 12 ************ consensus_6997#0 TACGCGACGTGTCGGGTCGTATACGTATCGCCCTGAACTTTGTTTTTCCTGGTGGTGGGA 420 consensus_6997#1 TACGCGACGTGTCGGGTCGTATACGTATCGCCCTGTAAATATTTTAAATAGGT--CAGTA 70 *********************************** * * *** *** * * consensus_6997#0 CCCATGGTGCTTGAGACTGACTAGTGTCAGGTGTTTTTGGAGTCGCCAAACCAGGCATGC 480 consensus_6997#1 TCTATCGTTTGCCAAGAAAAATATGCTCAAGTATTGAATGAAATGT-ATACCGCACGATC 129 * ** ** * * ** *** ** ** ** * * *** * * consensus_6997#0 GAGATACCTGTGTTTTATTATTGACATGGAGATGGATCGGTGTATCACCAGGTACATGTA 540 consensus_6997#1 CATTAACCAGAGCAATTACAT-GAAATGTACGTTATTTGCCATAGTAGGAGATA-ATATC 187 * *** * * * ** ** *** * * * * ** * ** ** ** * consensus_6997#0 AGTGAATTGGGTGTCCATTCACAGGTTGCCGAATACATGACGTATTTTTGCCTGTATTTA 600 consensus_6997#1 ATACTACTTAACACCTAAGC-CGTGTTATCCAGC-------------------------- 220 * * * * * * * *** * * consensus_6997#0 TAGTCATTTTGAATATGCACTATGCTGTCCGACAACAG 638 consensus_6997#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||