cluster # 700

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Schistosoma mansoni
cluster # 700 cluster # 700 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_700#0 length = 120 sequences # 1

consensus_700#1 length = 98 sequences # 1

consensusID : consensus_700#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence

                              [GAGCTGGTCCACATTTCACGAGTACCACCGTAATTACCACATCTCCACCACTGCAACCTCCACCATAGCCGCCGCCACAGTCACCACCAGTACAGTCCTCCACTTTATGAACTCTGTATG]

[+] EMBL CD128581             [GAGCTGGTCCACATTTCACGAGTACCACCGTAATTACCACATCTCCACCACTGCAACCTCCACCATAGCCGCCGCCACAGTCACCACCAGTACAGTCCTCCACTTTATGAACTCTGTATG]




>consensus_700#0
GAGCTGGTCCACATTTCACGAGTACCACCGTAATTACCACATCTCCACCACTGCAACCTC
CACCATAGCCGCCGCCACAGTCACCACCAGTACAGTCCTCCACTTTATGAACTCTGTATG

consensusID : consensus_700#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 98
fasta sequence

                              [TATGGCATACAGATTCATAAAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGT]

[+] EMBL CD128682             [TATGGCATACAGATTCATAAAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCGGCGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGT]




>consensus_700#1
TATGGCATACAGATTCATAAAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCG
GCGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_700#0      GAGCTGGTCCACATTTCACGAGTAC-CACCGTAATTACCACATCTCCACC-ACTGCAACC 58
consensus_700#1      TATGGCATACAGATTCATAAAGTGGATATGGTGGAGGCTGTACTGGTGGTGACTGTGGCG 60
                      *     * ** ***     ***    *  **     *   *         ****   * 

consensus_700#0      TCCACCATAGCCGCCGCCACAGTCACCACCAGTACAGTCCTCCACTTTATGAACTCTGTA 118
consensus_700#1      GCGGCTATGGTGGAGGTTGCAGTGGTGGAGATTGTGGT---------------------- 98
                      *  * ** *  *  *   ****       * *   **                      

consensus_700#0      TG 120
consensus_700#1      --