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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 772 fasta sequence
[TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA]
[-] EMBL CD125629 [TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATTGGCTCTTGATTGCCC ]
[+] EMBL CD095752 [ ACACCGTCCATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTCTAACTGCAACCCTCCAGTTACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGGACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGATGCATTTGAATTGGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATTCAGATGTTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTCTGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGTGTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGG ]
[-] EMBL CD160167 [ TGTCTACTTTAAATCGATGTATCATTAGTTTTCCTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATACACCAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAGCGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGGCTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTTGTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA]
consensusID : consensus_7003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC]
[+] EMBL CD184750 [CTAATGAGGATGGGTCAGAGACATAATCCACAGTGGAATTCTCAGGCGATTCGGAAATACACCGAATGGTATCATATAAAAACCGAGCAACACTGTAAGCTCGAATTTTAATCGCCAACATAAATGGTGTTAGGTCTTCAGTATTGCGAGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACTCTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCGTACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGTGGTGCGCACATCCGAGTCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCGCCGCAACAGTAGCAGCTTCAATAGAAGATCGAATAAACCGAGCGGCCGCTAATGTCATTTCTACTGAGTTAGGATAATCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7003#0 TGTTACTTACTTGGCCTAAATGTATGGGCCCCAAACACGGGAGCATCGGCAACACCGTCC 60
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 ATCTAGACGTCGCCTAACTTCTGCAACAACTCGAACTAACTTTAACTGCAACCCTCCAGT 120
consensus_7003#1 -----------------------------------CTAATGAGGATGG--GTCAGAGACA 23
**** * * * *
consensus_7003#0 TACTTCTGCGTCAAGTACAACATCTAATTGGGAACCGAATAACGGAGCTCAAAATTTGGG 180
consensus_7003#1 TAATCCACAGTGGAATTCTCAGGCGATTCGGAAAT---ACACCGAATGGTATCATATAAA 80
** * * ** * * * * * * ** ** * * ** * * ** *
consensus_7003#0 ACCAGAAGAGCCTGACCATGATCTAGAACCTCCTCGATTTGCACGTGCTGCATTTGAATT 240
consensus_7003#1 AACCGAGCAAC---ACTGTAAGCTCGAATTTTAATCGCCAACATA------AATGGTGTT 131
* * ** * * ** * * ** *** * ** * * * **
consensus_7003#0 GGCTCTTGATTGCCCTGCAGCTGTCCATAGCATGCTGACATTAGATAGCAATT-CAGATG 299
consensus_7003#1 AGGTCTTCAGTATTGCG-AGCAGTTAGAAGCGGGATCAAACTAGGTATTAAATGTCGACT 190
* **** * * * *** ** *** * * * * *** ** ** * **
consensus_7003#0 TTCTGGATACTGATCCACTTCATCAAAAGAATGGCTTCGTTAATGAAGACCAAGTTTTTC 359
consensus_7003#1 CTCTACTAAAAGACGAAGGATGCGATATGAAGAAATTCTCCGAGTAAGTTCATCTTTTCG 250
*** * ** * * * *** *** * *** ** ****
consensus_7003#0 TGTCATCTCAAGGTGGTACAAATCAGTTGGATGATTTTGTATTCACACTTATTTGCAAGT 419
consensus_7003#1 TACTGGAGGAAGATGCCAAAAATTTATACCATTTCCAGATGAAGGAGCAGTGTTAGAGGT 310
* *** ** * **** * ** * * ** * **
consensus_7003#0 GTCCCCCCGAAATAACTGACATTTTACTGTCTACTTTAAATCGATGTATCATTAGTTTTC 479
consensus_7003#1 GGTGCGC----ACATCCGAG---TCACCACGTGAAGTAGAGCTAGATAATGCTGCTGCCG 363
* * * * * * ** * ** * ** * * * ** * *
consensus_7003#0 CTTCAAGCATTGAAGAAAAGAAAAGAAAATTTTCAGATGATACTTTGCCGGCGGATATAC 539
consensus_7003#1 CCGCAA-CAGTAGCAGCTTCAATAGAAGAT---CGAATAA-ACCGAGCGGCCGCTAATGT 418
* *** ** * ** **** ** * ** * ** ** * ** **
consensus_7003#0 CAAATAATTCTTCATTTTTGAAGCAGTGTGATTATCCTAACTCAGTAGAAATGACATTAG 599
consensus_7003#1 CA---------TTTCTACTGAGTTAGGATAATCACAC----------------------- 446
** * * *** ** * ** * *
consensus_7003#0 CGGCCGCTCGGTTTATTCGCTCTGTAGCTCGAATATACGCTAGTTTGTCTTTGGAATTGG 659
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 CTCCTGACCAGAAAAAGAAGAGCCGTTTGGGTTTGGCTCAGCCAACGCTTTTGGATCTTT 719
consensus_7003#1 ------------------------------------------------------------
consensus_7003#0 GTCGACATGTATTCAGCAGTTTGGCTCCAATTGCTATTAATGAATTGCCTGTA 772
consensus_7003#1 -----------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||