These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 366 fasta sequence [CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGTGAATCAGAAGGGATCACACC-AAAAGTGTTTG-CTCGTTATGAGATGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAATTAATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAATATTCANCTTGTTAAAATATANTCA] [+] EMBL AA917137 [CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACTGCATTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGTGAATCAGAAGGGATCACACCAAAAAGTGTTTGCCTCGTTATGAGAGGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCG ] [+] EMBL SM7102 [ CGCTTTCNCGTTGCTCNTACTGCTCCTTCGAGCGCTGGAATTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGATTCGGGAATCAGAAGGGATCACACC AAAAGTGTTTG CTCGTTATGAGATGGGGAAGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAATTTCGAGACTGAAGACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAATTAATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAATATTCANCTTGTTAAAATATANTCA] [+] EMBL SM7131 [ ATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGTTTATGANTCGTGAATCAGAAGGGATCACACC AAAAGTGTTTG CTCGCTATGAGATGGGGAGGGAGGNCTATATTTCAGTGGCAAATAACACAGCGGAT ] consensusID : consensus_7007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 345 fasta sequence [GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGTTTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGAAGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANCACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATTNATACCTNCCCGGATAAATACATTGTTGTTATTTNTTAATNCNTT] [+] EMBL AW466258 [GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAATTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGTTTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGAAGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANCACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATTNATACCTNCCCGGATAAATACATTGTTGTTATTTNTTAATNCNTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7007#0 -----------------CTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAA 43 consensus_7007#1 GAGCCAANGTTANAGANCTGCGCTTTCTCGTTGCTCATACTGCTCCTTCGAGCGCTGGAA 60 ******************************************* consensus_7007#0 TTAGGGATTTCATTTCACGTCACTATCTGTCTCTAAAATCTGCCAATCCTCATGTGAAGT 103 consensus_7007#1 TTAGGGATTNCATTNCACGTCACTATCTGTCTCTAAAATCTGCCANTCCTCATGTGANGT 120 ********* **** ****************************** *********** ** consensus_7007#0 TTATGATTCGTGAATCAGAAGGGATCACACCAAAAGTGTTTGCTCGTTATGAGATGGGGA 163 consensus_7007#1 TTATGANTCGTGAATCAGNGGGGATCACNCCAANANTGTCTGCTCGTNATNAGATGGGGA 180 ****** *********** ******** **** * *** ******* ** ********* consensus_7007#0 AGGAAGACTATATTTCAGTGGCAAATAACACAGCTGATGATATAA-TTTCGAGACTGAAG 222 consensus_7007#1 AGGAAGACTATNTNTCNGTGGCAAANANCNCGGCTGATGATTTTTCTTTCGAGACTNANC 240 *********** * ** ******** * * * ********* * ********** * consensus_7007#0 ACTCTAGATCGAGTATAAATGTTTTNTTGNGACAATTCTACGCAAATTAGNTTACAA-TT 281 consensus_7007#1 ACCCTAGATCGAGTATNTNTGTTTNTTNGTNACCANCCNCCGCAAATTANTTTACAAATT 300 ** ************* ***** * * ** * * ********* ****** ** consensus_7007#0 AATAACTTTCAGGATAAATAGCATGGTGGNGATTTTATTCANTNGTGTCAGCAAAAGAAA 341 consensus_7007#1 NATACCTNCCCGGATAAATA-CATTGTTGTTATTTN-TTAATNCNTT------------- 345 *** ** * ********* *** ** * **** ** * * consensus_7007#0 TATTCANCTTGTTAAAATATANTCA 366 consensus_7007#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||