cluster # 7011

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Schistosoma mansoni
cluster # 7011 cluster # 7011 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7011#0 length = 510 sequences # 3

consensus_7011#1 length = 115 sequences # 1

consensusID : consensus_7011#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 510
fasta sequence

                              [CGAAAGACTGCAACTGATTTTCATCTTTAGAAGCAATAACACCGTTTTCTTCAATGGGTGCCATGGACTCGCCAAAATCAGACAAGAAAGACAAAGCACCATGTAATAAAATGTTACTATTCGTTTTAGAGGCTTTTTCAATTACAATCTGAATTGATATGAGTAGATAACTGACTTCTGTTACGTGACGGAAAAGTTTATGTATGTGTTCAATAAGGTTTGAAATCTGACGAAATACAGGACCAGAGCGTTCCGGATTACAACCTGTTAGTGTAGACAGGTTGTCTTTGCGGAGCTGAAACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACACGGAATTGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAGAGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTCAAGTAGATTGCTGATCAGTGTTAAACTAGCTAATAAGTGCT]

[+] EMBL CD061789             [CGAAAGACTGCAACTGATTTTCATCTTTAGAAGCAATAACACCGTTTTCTTCAATGGGTGCCATGGACTCGCCAAAATCAGACAAGAAAGACAAAGCACCATGTAATAAAATGTTACTATTCGTTTTAGAGGCTTTTTCAATTACAATCTGAATTGATATGAGTAGATAACTGACTTCTGTTACGTGACGGAAAAGTTTATGTATGTGTTCAATAAGGTTTGAAATCTGACGAAATACAGGACCAGAGCGTTCCGGATTACAACCTGTTAGTGTAGACAGGTTGTCTTTGCGGAGCTGAAACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACACGGAATAGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAGAGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTC                                         ]
[-] EMBL CD112260             [                                                                  ACTCGCCAAAATCAGACAAGAAAGACAAAGCNCCATGTAATAAAATGTTACTATTCGTTTTAGAGGCTTTTTCAATTACAATCTGAATTGAAATGAGTAGATAACTGACTTCTGTTACGTGACGGAAAAGTCTATGTATGTGTTCAATAAGGTTTGAAATCTGACGAAATACAGGACCAGAGCGTTCCGGATTACAACCTGTAAGTGTAGACAGGTTGTCTTTGCGGAGCTGAAACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACACGGAATTGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAGAGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTCAAGTAGATTGCTGATCAGTGTTAAACTAGCTAATAAGTGCT]
[+] EMBL CD119695             [                                                                                                                                                                                                                               AATCTGACGAAATACAGGACCAGAGCGTTCCGGATTACAACCTGTTAGTGTAGACAGGTTGTCTTTGCGGAGCTGAAACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACGCGGAATTGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAGAGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTCAAGTAG                                   ]




>consensus_7011#0
CGAAAGACTGCAACTGATTTTCATCTTTAGAAGCAATAACACCGTTTTCTTCAATGGGTG
CCATGGACTCGCCAAAATCAGACAAGAAAGACAAAGCACCATGTAATAAAATGTTACTAT
TCGTTTTAGAGGCTTTTTCAATTACAATCTGAATTGATATGAGTAGATAACTGACTTCTG
TTACGTGACGGAAAAGTTTATGTATGTGTTCAATAAGGTTTGAAATCTGACGAAATACAG
GACCAGAGCGTTCCGGATTACAACCTGTTAGTGTAGACAGGTTGTCTTTGCGGAGCTGAA
ACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACACGGAATTGTTCGTATTTT
TCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAG
AGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTCAAGTAGATTGC
TGATCAGTGTTAAACTAGCTAATAAGTGCT

consensusID : consensus_7011#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [TTCAGATTGTAATTGAAAAAGCCTCTAAAACGAATAGTAACATTTTATTACACGGAATTGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGTTT]

[+] EMBL CD062648             [TTCAGATTGTAATTGAAAAAGCCTCTAAAACGAATAGTAACATTTTATTACACGGAATTGTTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGTTT]




>consensus_7011#1
TTCAGATTGTAATTGAAAAAGCCTCTAAAACGAATAGTAACATTTTATTACACGGAATTG
TTCGTATTTTTCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7011#0      CGAAAGACTGCAACTGATTTTCATCTTTAGAAGCAATAACACCGTTTTCTTCAATGGGTG 60
consensus_7011#1      ------------------------------------------------------------
                                                                                  

consensus_7011#0      CCATGGACTCGCCAAAATCAGACAAGAAAGACAAAGCACCATGTAATAAAATGTTACTAT 120
consensus_7011#1      ------------------------------------------------------------
                                                                                  

consensus_7011#0      TCGTTTTAGAGGCTTTTTCAATTACAATCTGAATTGATATGAGTAGATAACTGACTTCTG 180
consensus_7011#1      ------------------------------------------------------------
                                                                                  

consensus_7011#0      TTACGTGACGGAAAAGTTTATGTATGTGTTCAATAAGGTTTGAAATCTGACGAAATACAG 240
consensus_7011#1      ------------------------------------------------------------
                                                                                  

consensus_7011#0      GACCAGAGCGTTCCGGATTACAACCTGTTAGTGTAGACAGGTTGTCTTTGCGGAGCTGAA 300
consensus_7011#1      -------------------------------------------TTCAGATTGTAATTGAA 17
                                                                  **     * *  ****

consensus_7011#0      ACATAAGACTTAGTAGTGTTACTGCAACAGGTTCTTGATACACGGAATTGTTCGTATTTT 360
consensus_7011#1      A---AAGCCTCTAAAACGA-ATAGTAACA---TTTTATTACACGGAATTGTTCGTATTTT 70
                      *   *** **    *  *  *  * ****   * **  **********************

consensus_7011#0      TCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGATTCAGTATTTTCTGAAG 420
consensus_7011#1      TCTTAGTCGTACTCTCAAATTCTAACCACTTTCCAATAGCTGTTT--------------- 115
                      ****************************************** **               

consensus_7011#0      AGTAGTCACCTTTAGACTGTTGACATAACCGATGAATGATGGCTAACTCAAGTAGATTGC 480
consensus_7011#1      ------------------------------------------------------------
                                                                                  

consensus_7011#0      TGATCAGTGTTAAACTAGCTAATAAGTGCT 510
consensus_7011#1      ------------------------------