cluster # 7012

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Schistosoma mansoni
cluster # 7012 cluster # 7012 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7012#0 length = 796 sequences # 2

consensus_7012#1 length = 554 sequences # 2

consensusID : consensus_7012#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 796
fasta sequence

                              [CCGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAGTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACCCAAGAGCTAGATAACTTGAAGCCATATGCAGAGTTATGGATGGGGACTCATGTTTCTGGACCGTCTTTCATGATGGATAGTCCTTCAATTTCTCTTGACGCTTATATTTCAAGAAATCCACACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAGTTCTTTCTGTGCGAAAGGCGTTATCTATCCAGGCTCATCCAGACAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACAAAGACGCTAATCACAAACCGGAAATGGCTATCGCTTCAACACCTTTCGAGGCAATGGTTGGTTTCAGACCCCCCGAAG-AATTGGTGCCTTTGCGAAACATATTCCAGAACTTCATGCCCTAATTGGGCCAGA-TTTACAAATGGCTTGTT-AATATTTTCACAGTAGACAAAACGCTGACTTCCTCATCAGTTAAAGGCCGCCTATTCTCGTTAAATGAATGCCGATTCCAGTGTTGTCAGAAATTTAAGGGAAAGCT-TGAAAAAACCTTTGACTAATGGGGAAAAGATAATTATCCCACCTTTTAAAATTATATTCTTGAACAGAAACTCTTGGAGAGTATTCATTCGNTTAGCAACAGATTACCCTGGAGAGGTGGCCTGTTTAGGTTGGTCTTTTTAATTATTT]

[+] EMBL CD200529             [CCGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAGTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACCCAAGAGCTAGATAACTTGAAGCCATATGCAGAGTTATGGATGGGGACTCATGTTTCTGGACCGTCTTTCATGATGGATAGTCCTTCAATTTCTCTTGACGCTTATATTTCAAGAAATCCACACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAGTTCTTTCTGTGCGAAAGGCGTTATCTATCCAGGCTCATCCAGACAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACAAAGACGCTAATCACAAACCGGAAATGGCTATCGCTTCAACACCTTTCGAGGCAATGGTTGGTTTCAGACCCCCCGAAG AATTGGTGCCTTTGCGAAACATATTCCAGAACTTCATGCCCTAATTGGGCCAGA TTTACAAATGGCTTGTT AATATTTTCACAGTAGACAAAACGCTGACTTCCTCATCAGTTAAAGGCCGCCTATTCTCGTTAAATGAATGCCGATTCCAGTGTTGTCAGAAATTTAAGGGAAAGCT TGAAAAAACCTTTGACTAATGGGGAA                                                                                                                           ]
[+] EMBL CD189189             [                                                                                                                                                                                                                                                                                                                                GTTATCTATCCAGGCTCATCCAGACAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACAAAGATGCTAATCACAAACCGGAAATAGCTATCGCTTTAACACCTTTCGAGGCAATGGTTGGTTTCAGACCCCCCGAAGAAATTGGTGCCTTTGCGAAACATATTCCAGAACTTCATGCCATAATTGGTCCAGATTTTACAAATGGCTTGTTAAATATTTTCACAGTAGACAAAACGCTTACTTCCTCATCAGTTAAA GCCGCCTATTCTCGTTTAATGAATGCCGATTCCAGTGTTGTCAGTAATTT AGTGGAAGCTNTGAAAAGACGTCTGACTAATGGTGAAAAGATAATTATCCCACCTTTTAAAATTATATTCTTGAACAGAAACTCTTGGAGAGTATTCATTCGNTTAGCAACAGATTACCCTGGAGAGGTGGCCTGTTTAGGTTGGTCTTTTTAATTATTT]




>consensus_7012#0
CCGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAA
GTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACC
CAAGAGCTAGATAACTTGAAGCCATATGCAGAGTTATGGATGGGGACTCATGTTTCTGGA
CCGTCTTTCATGATGGATAGTCCTTCAATTTCTCTTGACGCTTATATTTCAAGAAATCCA
CACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAA
GTTCTTTCTGTGCGAAAGGCGTTATCTATCCAGGCTCATCCAGACAAGGAGTATGCTGCT
AAGTTACATGCTAATAGACCTGACCTATACAAAGACGCTAATCACAAACCGGAAATGGCT
ATCGCTTCAACACCTTTCGAGGCAATGGTTGGTTTCAGACCCCCCGAAGAATTGGTGCCT
TTGCGAAACATATTCCAGAACTTCATGCCCTAATTGGGCCAGATTTACAAATGGCTTGTT
AATATTTTCACAGTAGACAAAACGCTGACTTCCTCATCAGTTAAAGGCCGCCTATTCTCG
TTAAATGAATGCCGATTCCAGTGTTGTCAGAAATTTAAGGGAAAGCTTGAAAAAACCTTT
GACTAATGGGGAAAAGATAATTATCCCACCTTTTAAAATTATATTCTTGAACAGAAACTC
TTGGAGAGTATTCATTCGNTTAGCAACAGATTACCCTGGAGAGGTGGCCTGTTTAGGTTG
GTCTTTTTAATTATTT

consensusID : consensus_7012#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 554
fasta sequence

                              [CGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAGTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACCCAAGAGCTAGATAACTTGAAGCCATATGCAGAGCTATGGATGGGGACTCATGTTTCTGGACCGTCTTTCATGATGGATAGTCCTCCAATTTCTCTTGACGCTTATATTTCAAGAAATCCACACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAGTTCTTTCTGTGCGAAAGGCGTTATCTGTCCAGGCTCATCCAGACAAGATATTTTCATGTAAAACAATTGTGGTTGAATCTCAAGTTTACAACTTAATCAATAAAGAACTAAAAAAGCTATTACTCAAATCTCAAAATATTATTAAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACANAGATGCTAATCACANACCGGAAATAGCTATCGCTTTACACCTTTCGAGGCAATGGTTGGTTTC]

[+] EMBL CD153114             [CGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAGTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACCCAAGAGCTAGATAACTTGAAGCCATATGCAGAGCTATGGATGGGGACTCATGTTTCTGGACCGTCTTTCATGATGGATAGTCCTCCAATTTCTCTTGACGCTTATATTTCAAGAAATCCACACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAGTTCTTTCTGTGCGAAAGGCGTTATCTGTCCAGGCTCATCCAGACAAGATATTTTCATGTAAAACAATTGTGGTTGAATCTCAAGTTTACAACTTAATCAATAAAGAACTAAAAAAGCTATTACTCAAATCTCAAAATATTATTAAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACANAGATGCTAATCACANACCGGAAATAGCTATCGCTTTACACCTTTCGAGGCAATGGTTGGTTTC]
[+] EMBL CD153139             [CGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAGTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACGAGCTATTGAGTCAAACCCAAGAGCTAGATAACTTGAAGCCATATGCAGAGCTATGGATGGGGACTCATGTTTCTGGACCGTCTTTCATGATGGATAGTCCTTCAATTTCTCTTGACGCTTATATTTCAAGAAATCCACACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAGTTCTTTCTGTGCGAAAGGCGTTATCTGTCCAGGCTCATCCAGACAAGATATTTTCATGTAAAACAATTGTGGTTGAATCTCAAGTTTACAACTTAATCAATAAAGAACTAAAAAAGCTATTACTCAAATCTCAAAATATTATTAAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCTGACCTATACAAAGATGCTAATCACANACCGGAAATAGCTATCGCTT                            ]




>consensus_7012#1
CGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAAG
TATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACCC
AAGAGCTAGATAACTTGAAGCCATATGCAGAGCTATGGATGGGGACTCATGTTTCTGGAC
CGTCTTTCATGATGGATAGTCCTCCAATTTCTCTTGACGCTTATATTTCAAGAAATCCAC
ACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAAG
TTCTTTCTGTGCGAAAGGCGTTATCTGTCCAGGCTCATCCAGACAAGATATTTTCATGTA
AAACAATTGTGGTTGAATCTCAAGTTTACAACTTAATCAATAAAGAACTAAAAAAGCTAT
TACTCAAATCTCAAAATATTATTAAAGGAGTATGCTGCTAAGTTACATGCTAATAGACCT
GACCTATACANAGATGCTAATCACANACCGGAAATAGCTATCGCTTTACACCTTTCGAGG
CAATGGTTGGTTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7012#0      CCGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAA 60
consensus_7012#1      -CGTTTTGTGACTTATAGGGTTATTAGCCAGCTATGTTTCGTTTAAAATGTGCTTTTCAA 59
                       ***********************************************************

consensus_7012#0      GTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACC 120
consensus_7012#1      GTATATGATTGGGGTAAAATTGGAGTAAACAGTGAGGTGTACAAGCTATTGAGTCAAACC 119
                      ************************************************************

consensus_7012#0      CAAGAGCTAGATAACTTGAAGCCATATGCAGAGTTATGGATGGGGACTCATGTTTCTGGA 180
consensus_7012#1      CAAGAGCTAGATAACTTGAAGCCATATGCAGAGCTATGGATGGGGACTCATGTTTCTGGA 179
                      ********************************* **************************

consensus_7012#0      CCGTCTTTCATGATGGATAGTCCTTCAATTTCTCTTGACGCTTATATTTCAAGAAATCCA 240
consensus_7012#1      CCGTCTTTCATGATGGATAGTCCTCCAATTTCTCTTGACGCTTATATTTCAAGAAATCCA 239
                      ************************ ***********************************

consensus_7012#0      CACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAA 300
consensus_7012#1      CACTGTTTAGGTTCCACAGTGTGTGAAAGATTTGGCAAGGCTTTACCTTTTCTGTTCAAA 299
                      ************************************************************

consensus_7012#0      GTTCTTTCTGTGCGAAAGGCGTTATCTATCCAGGCTCATCCAGACAAGGAGTATGCTGCT 360
consensus_7012#1      GTTCTTTCTGTGCGAAAGGCGTTATCTGTCCAGGCTCATCCAGACAAGATATTTTCATGT 359
                      *************************** ********************   * * *   *

consensus_7012#0      AAGTTACATGCTAATAGACCTGACCTATACAAAGACGCTAATCACAAACCGGAAATGGCT 420
consensus_7012#1      AAAACAATTGTGGTTGAATCTCAAGTTTACAACTTAATCAATAAAGAACTAAAAA-AGCT 418
                      **   *  **    *  * ** *  * *****       *** *  ***   ***  ***

consensus_7012#0      ATCGCTTCAACACCTTTCGAGGCAATGGTTGGTTTCAGACCCCCCGAAGAATTGGTGCCT 480
consensus_7012#1      ATTACTCAAA----TCTCAAAATATTA-TTAAAGGAGTATGCTGCTAAGT-TACATGC-- 470
                      **  **  **    * ** *   * *  **        *  *  * ***  *   ***  

consensus_7012#0      TTGCGAAACATATTCCAGAACTTCATGCCCTAATTGGGCCAGATTTACAAATGGCTTGTT 540
consensus_7012#1      -TAATAGACCTGACCTATACANAGATGCTAATCACANACCGGAAATAGCTATCGCTT--T 527
                       *   * ** *   * * *     ****          ** **  **   ** ****  *

consensus_7012#0      AATATTTTCACAGTAGACAAAACGCTGACTTCCTCATCAGTTAAAGGCCGCCTATTCTCG 600
consensus_7012#1      ACACCTTTCG----AGGCAATG-GTTGGTTTC---------------------------- 554
                      *    ****     ** ***   * **  ***                            

consensus_7012#0      TTAAATGAATGCCGATTCCAGTGTTGTCAGAAATTTAAGGGAAAGCTTGAAAAAACCTTT 660
consensus_7012#1      ------------------------------------------------------------
                                                                                  

consensus_7012#0      GACTAATGGGGAAAAGATAATTATCCCACCTTTTAAAATTATATTCTTGAACAGAAACTC 720
consensus_7012#1      ------------------------------------------------------------
                                                                                  

consensus_7012#0      TTGGAGAGTATTCATTCGNTTAGCAACAGATTACCCTGGAGAGGTGGCCTGTTTAGGTTG 780
consensus_7012#1      ------------------------------------------------------------
                                                                                  

consensus_7012#0      GTCTTTTTAATTATTT 796
consensus_7012#1      ----------------