cluster # 7014

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Schistosoma mansoni
cluster # 7014 cluster # 7014 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7014#0 length = 1002 sequences # 3

consensus_7014#1 length = 481 sequences # 1

consensusID : consensus_7014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1002
fasta sequence

                              [CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT-TTTT-AGAGACCAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACTGGCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAACAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGAGATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGATTATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGAGAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGGGA]

[+] EMBL CD116844             [CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCACCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT TTTT AGAGAC                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD096413             [                                                                                                                TATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT TTTTAAGAGACCAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACTGGCTTC                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD096331             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTNTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTATGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCTATTTA AGAGACAAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACT GCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAACAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGAGATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGATTATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGAGAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGGGA]




>consensus_7014#0
CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTAGGTAA
ACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTATGCATA
TTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCA
TCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTT
GCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAA
GCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATT
AAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATA
GCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCT
GCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCAT
ACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATG
TTTTGATGTCTTTTTAGAGACCAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCAC
GCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACTGGCTTCTAAAGCC
TGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAACAAGAGGTTTTTCATTTTTT
GACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGAGATAAGAGGTTGGGTTGGAA
GACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGATTATTTAAAGGGAATAAGGTT
GCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGAGAAAAGAATTCGTTGTCTCT
GTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGGGA

consensusID : consensus_7014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAACCCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCGATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAAGTCGTGTAGGTGTAATATTACGGTCAATTGGCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTTGGTAAACACCGGATAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTAGCATATTACTATTACTCAATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATAAACGCCATATGATGTTTTAGGTAGTTTTCCAGAGAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTACACTGGGATCGATTTAGGTGAGCAGGGGGGTTCTGACCA]

[-] EMBL CD160434             [CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAACCCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCGATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAAGTCGTGTAGGTGTAATATTACGGTCAATTGGCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTTGGTAAACACCGGATAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTAGCATATTACTATTACTCAATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATAAACGCCATATGATGTTTTAGGTAGTTTTCCAGAGAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTACACTGGGATCGATTTAGGTGAGCAGGGGGGTTCTGACCA]




>consensus_7014#1
CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAAC
CCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCG
ATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAA
GTCGTGTAGGTGTAATATTACGGTCAATTGGCCGGATTTATTAGTCACTTTAGAACATGA
TCCATTGGAGGTTTGGTAAACACCGGATAAGTATTAGGTGGGAGTAGCTTTTTATTAGAC
ATTAAAGGTGTAGCATATTACTATTACTCAATAGGCTTTTTTATGTTCTCCTGTCTCGTC
TAATATAAACGCCATATGATGTTTTAGGTAGTTTTCCAGAGAGCTTCACGATCGAGACAG
ACACGAAGAGTTGCTCCAGTTACACTGGGATCGATTTAGGTGAGCAGGGGGGTTCTGACC
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7014#0      ------------------------------------------------------------
consensus_7014#1      CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAAC 60
                                                                                  

consensus_7014#0      ------------------------------------------------------------
consensus_7014#1      CCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCG 120
                                                                                  

consensus_7014#0      ------------------------------------------------------------
consensus_7014#1      ATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAA 180
                                                                                  

consensus_7014#0      --------------------CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATG 40
consensus_7014#1      GTCGTGTAGGTGTAATATTACGGTCAATTGG-CCGGATTTATTAGTCACTTTAGAACATG 239
                                          *********** ****************************

consensus_7014#0      ATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAG 100
consensus_7014#1      ATCCATTGGAGGTTTGGTAAACACCGGAT-AAGTATTAGGTGGGAGTAGCTTTTTATTAG 298
                      ************** ************** ******************************

consensus_7014#0      ACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCT 160
consensus_7014#1      ACATTAAAGGTGTA-GCATATTACTATTACTCA-ATAGGCTTTTTTATGTTCTCCTGTCT 356
                      ************** ****************** **************************

consensus_7014#0      CGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGAT 220
consensus_7014#1      CGTCTAATATA-AACG-CCATATGATGTTTTAGGTAGTTTTCCA-GAG-AGCTTCACGAT 412
                      *********** **** **** *********** ********** *** ***********

consensus_7014#0      CGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTA 280
consensus_7014#1      CGAGACAGACACGAAGAGTTGCTCCAGTTA-CACTGGGATCGATTTAGGTGAGCAGGGGG 471
                      ****************************** * ******************* *      

consensus_7014#0      AATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTC 340
consensus_7014#1      GTTCTGACCA-------------------------------------------------- 481
                        **     *                                                  

consensus_7014#0      CTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTAC 400
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTAT 460
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAAT 520
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAAT 580
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GAGTTTGTTCTGAATTTATGTTTTGATGTCTTTTTAGAGACCAGAGATACGTTCAAAATC 640
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      AGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAA 700
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GTCAACTGGCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAA 760
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      CAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGA 820
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGAT 880
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      TATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGA 940
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGG 1000
consensus_7014#1      ------------------------------------------------------------
                                                                                  

consensus_7014#0      GA 1002
consensus_7014#1      --