These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1002 fasta sequence [CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT-TTTT-AGAGACCAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACTGGCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAACAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGAGATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGATTATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGAGAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGGGA] [+] EMBL CD116844 [CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCACCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT TTTT AGAGAC ] [+] EMBL CD096413 [ TATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTAAATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTCCTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTACTTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCT TTTTAAGAGACCAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACTGGCTTC ] [-] EMBL CD096331 [ ATTAGTATTACCAGTACCGGAAGTCGCTGCTGTTNTACGCCATTTCGATGGATTCCGATAGCTTAAATTACCTATGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAATGAGTTTGTTCTGAATTTATGTTTTGATGTCTATTTA AGAGACAAGAGATACGTTCAAAATCAGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAAGTCAACT GCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAACAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGAGATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGATTATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGAGAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGGGA] consensusID : consensus_7014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAACCCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCGATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAAGTCGTGTAGGTGTAATATTACGGTCAATTGGCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTTGGTAAACACCGGATAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTAGCATATTACTATTACTCAATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATAAACGCCATATGATGTTTTAGGTAGTTTTCCAGAGAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTACACTGGGATCGATTTAGGTGAGCAGGGGGGTTCTGACCA] [-] EMBL CD160434 [CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAACCCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCGATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAAGTCGTGTAGGTGTAATATTACGGTCAATTGGCCGGATTTATTAGTCACTTTAGAACATGATCCATTGGAGGTTTGGTAAACACCGGATAAGTATTAGGTGGGAGTAGCTTTTTATTAGACATTAAAGGTGTAGCATATTACTATTACTCAATAGGCTTTTTTATGTTCTCCTGTCTCGTCTAATATAAACGCCATATGATGTTTTAGGTAGTTTTCCAGAGAGCTTCACGATCGAGACAGACACGAAGAGTTGCTCCAGTTACACTGGGATCGATTTAGGTGAGCAGGGGGGTTCTGACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7014#0 ------------------------------------------------------------ consensus_7014#1 CAACTTTTATTTTTTTGTCACATACATTTATCTCACTAGAAATTTTCTTAGCTTTTGAAC 60 consensus_7014#0 ------------------------------------------------------------ consensus_7014#1 CCGGTGGACGTCCTCCTCTACCGGAACTCAATGGAGGCATTGAAAAATTAGGTGTAAGCG 120 consensus_7014#0 ------------------------------------------------------------ consensus_7014#1 ATAAATTAACAGGTTTTCCATTAGTGATATTAGGAGTTTGTTTAGCTGCTAAAGGATGAA 180 consensus_7014#0 --------------------CGGTCAATTGGTCCGGATTTATTAGTCACTTTAGAACATG 40 consensus_7014#1 GTCGTGTAGGTGTAATATTACGGTCAATTGG-CCGGATTTATTAGTCACTTTAGAACATG 239 *********** **************************** consensus_7014#0 ATCCATTGGAGGTTAGGTAAACACCGGATGAAGTATTAGGTGGGAGTAGCTTTTTATTAG 100 consensus_7014#1 ATCCATTGGAGGTTTGGTAAACACCGGAT-AAGTATTAGGTGGGAGTAGCTTTTTATTAG 298 ************** ************** ****************************** consensus_7014#0 ACATTAAAGGTGTATGCATATTACTATTACTCATATAGGCTTTTTTATGTTCTCCTGTCT 160 consensus_7014#1 ACATTAAAGGTGTA-GCATATTACTATTACTCA-ATAGGCTTTTTTATGTTCTCCTGTCT 356 ************** ****************** ************************** consensus_7014#0 CGTCTAATATATAACGTCCATCTGATGTTTTAGCTAGTTTTCCATGAGTAGCTTCACGAT 220 consensus_7014#1 CGTCTAATATA-AACG-CCATATGATGTTTTAGGTAGTTTTCCA-GAG-AGCTTCACGAT 412 *********** **** **** *********** ********** *** *********** consensus_7014#0 CGAGACAGACACGAAGAGTTGCTCCAGTTAACTCTGGGATCGATTTAGGTGAACTATTTA 280 consensus_7014#1 CGAGACAGACACGAAGAGTTGCTCCAGTTA-CACTGGGATCGATTTAGGTGAGCAGGGGG 471 ****************************** * ******************* * consensus_7014#0 AATCATTTAAAAATTGTAAAGCTCGTTCAACTTGAAAAAGACTGTAACCACCATTTGGTC 340 consensus_7014#1 GTTCTGACCA-------------------------------------------------- 481 ** * consensus_7014#0 CTGGTTGTGAAAATGGAATTAAATTAGTACATGACTGTGTTGATTGACTCGATAAATTAC 400 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TTTCCATAAGACTACGAATAGCATCAACTAGTTTATGACTTACACTAGGCAAATTAGTAT 460 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TACCAGTACCGGAAGTCGCTGCTGTTTTACGCCATTTCGATGGATTCCGATAGCTTAAAT 520 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TACCTTTGTAATCAACGCATACAACCGCTCCAGCATCAGCAAGACGTTGAAGGCATAAAT 580 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GAGTTTGTTCTGAATTTATGTTTTGATGTCTTTTTAGAGACCAGAGATACGTTCAAAATC 640 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 AGGTCGAGCTTTTCTTTCACGCAACTTATCAATAGCATCCAAAATGGCATCTCGATGAAA 700 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GTCAACTGGCTTCTAAAGCCTGTAGATTTCTAACATTACCAACTTTTGCAGGGACTGAAA 760 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 CAAGAGGTTTTTCATTTTTTGACGATATTGTCGAAGCATGATCACCATTGGTAGATGGGA 820 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GATAAGAGGTTGGGTTGGAAGACAAACTGGCTACTGTTGTGATCGGCAAAATAGTAGGAT 880 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 TATTTAAAGGGAATAAGGTTGCTGTGTAAATTGGTGTTGTATAGTTGGAGGATGATACGA 940 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GAAAAGAATTCGTTGTCTCTGTTATTGAGTTAGATGGCAGGGATTGAGGTATTCCTATGG 1000 consensus_7014#1 ------------------------------------------------------------ consensus_7014#0 GA 1002 consensus_7014#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||