cluster # 7023

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Schistosoma mansoni
cluster # 7023 cluster # 7023 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7023#0 length = 657 sequences # 2

consensus_7023#1 length = 352 sequences # 1
consensus_7023#2 length = 119 sequences # 1

consensusID : consensus_7023#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence

                              [ATTAAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAAACTTTT]

[+] EMBL CD127853             [ATTAAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAA      ]
[+] EMBL CD185805             [                                                                                                                                        ATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTGTGAATATTCAGAAAACACGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGAGCTACAAACCTTATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTATGAACTTTATTATCTTGAGCAACGGCACTACTGGCATATTGCCGCCAAAACTTTT]




>consensus_7023#0
ATTAAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCAT
CCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAAC
ACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGAC
TAACTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGT
GTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTC
GAAATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAAT
TGTGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACG
AATACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGT
CCTAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAA
GAGCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAG
TATGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAAACTTTT

consensusID : consensus_7023#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence

                              [TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATTCAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCT]

[+] EMBL CD159882             [TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATTCAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCACATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACCTGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAACTTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTAAATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCT]




>consensus_7023#1
TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATT
CAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCA
CATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACC
TGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAA
CTTTTGTTGGATCATAGTCTGTGTACTCGTGACCGGAATCCTCATGGTCTGAGCCACTTA
AATCTTCAACTTCCCCTTCCTCGAAATCAATAGAGGTCATTGATTGGCTGCT

consensusID : consensus_7023#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence

                              [GTTGCTCTAGATAATAAAGTTCATACTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGCAGCCAATCAATGACCTCTATTGATTTCGAGGAAG]

[+] EMBL CD187817             [GTTGCTCTAGATAATAAAGTTCATACTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGCAGCCAATCAATGACCTCTATTGATTTCGAGGAAG]




>consensus_7023#2
GTTGCTCTAGATAATAAAGTTCATACTATTGTGTGAACCCTATAAATACAAAAGTCAGTT
ACGGCTTTTGATGAGCATTGTTAGCAGCCAATCAATGACCTCTATTGATTTCGAGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7023#0      ---------------------------------------------------------ATT 3
consensus_7023#1      TCTTATCAGGTTCCTCATGGCTCATTAAGCAAGTATCATCTTCGTCTTCAGACAGGAATT 60
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      AAGACATAGGTAGGTTACTACGCTCTTTTTAGCGCTTACTGTTTGCATTCCGCCCATCCA 63
consensus_7023#1      CAAGTAATGGTAGCTTACTACGCTCTTTGGAGCGCTTACTGATTGCATTCCGCCCATCCA 120
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      CATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACC 123
consensus_7023#1      CATGTGGAAGCTCAACAGCTCGGAGACCCAACAAAACAGTTGATTCTCGACGAGAACACC 180
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      TGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAA 183
consensus_7023#1      TGGACCTATCAGCATTACGCTGAGTGTGACGTTTGCGCTTTGACGACTTATAAAGACTAA 240
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      CTCTGTGAAGGTTATGTACAGAAATAAGTCAAAATACTTTGTTGGATCATAGTCTGTGTA 243
consensus_7023#1      CT-----------------------------------TTTGTTGGATCATAGTCTGTGTA 265
consensus_7023#2      -----------------------------------GTTGCTCTAGATAATAAAGTTCATA 25
                                                           *    * *** ***   *   **

consensus_7023#0      CTCGTGACCGGAATCCTCATGGTCTGA-GCCACTTAAATCTTCAACTTCCCCTTCCTCGA 302
consensus_7023#1      CTCGTGACCGGAATCCTCATGGTCTGA-GCCACTTAAATCTTCAACTTCCCCTTCCTCGA 324
consensus_7023#2      CTATTGTGTGAACCCTATAAATACAAAAGTCAGTTACGGCTTTTGATGAGCATTGTTAGC 85
                      **  **   * *  *   *    *  * * ** ***   ***    *   * **  * * 

consensus_7023#0      AATCAATAGAGGTCATTGATTGGCTGCTAACAATGCTAAAATGGATACACGAACCAATTG 362
consensus_7023#1      AATCAATAGAGGTCATTGATTGGCTGCT-------------------------------- 352
consensus_7023#2      AGCCAATCAATGACCTCTATTGATTTCGAGGAAG-------------------------- 119
                      *  ****  * * * *  ****  * *                                 

consensus_7023#0      TGAATATTCAGAAAACGCGACTACAGTACAACGAACTAGCACTCAGTGACGACTAACGAA 422
consensus_7023#1      ------------------------------------------------------------
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      TACAGGAATACCTAAAATAACTTAGTTGCTTACGTCTGCCGAGAGCAAACACACCAGTCC 482
consensus_7023#1      ------------------------------------------------------------
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      TAAATACATTGGTTATTACACTGTTACTTAACATCGCAATCCATGCATTTGAAACTAAGA 542
consensus_7023#1      ------------------------------------------------------------
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      GCTACAAACCTCATCAAAAGCCCTAACTGATTTTGTATTTCTAGGGTTCACACAATAGTA 602
consensus_7023#1      ------------------------------------------------------------
consensus_7023#2      ------------------------------------------------------------
                                                                                  

consensus_7023#0      TGAACTNTATTATCTTGAGCAACGGCACTACTGGCAGAATGCCGCCAAAACTTTT 657
consensus_7023#1      -------------------------------------------------------
consensus_7023#2      -------------------------------------------------------