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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 890 fasta sequence
[GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTTTGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAACCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTATGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAACACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAATGGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC]
[+] EMBL CD200791 [GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTTTGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAACCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTATGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAACACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAATGGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTT ]
[-] EMBL CD096574 [ TCTTCTGCAAATACAACACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACNCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC]
consensusID : consensus_7027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence
[CTGAGTAATCTCCCATATACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC]
[-] EMBL CD096560 [CTGAGTAATCTCCCATATACCTCTTCGTGACTCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC]
[-] EMBL CD096533 [ TAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACGCCATATTTCTTCGAATATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAACAGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTTCCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAATCGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACTGTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTATGTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACCTCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATAGGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7027#0 GATTGGGGCCGGCCTGGGGGAATACTGAATGCAGGCAATCTTTTCAATAAAATCATTCTT 60
consensus_7027#1 ------------------------------------------------------------
consensus_7027#0 TGCCGACTTGAGAGTTATAAATTGTTGAACATCAAAGGTTCTGCTGAAAAATATCTGAAA 120
consensus_7027#1 ------------------------------------------------------------
consensus_7027#0 CCCCTTTTTCCAACTTTAATTCAACTTTGGCCTGATGGTTGGATTACTAATGCCGCATTA 180
consensus_7027#1 ------------------------------------------------------------
consensus_7027#0 TGGCGTACTGGTTTACCGATCTTCCAAAAGTTTTGCAGCGATAATGGTTTGATTAACAAC 240
consensus_7027#1 ------------------------------------------------------------
consensus_7027#0 ACTTCAGCATCTCAATCGCTTACACGACCTACGAACAACAATAACAACCATAATAGTAAT 300
consensus_7027#1 ------------------------------------------------------------
consensus_7027#0 GGAAGTAATGGAAGAAATCACAATTCGCCTTCTTCTGCAAATACAACACCTCCTCGTGAC 360
consensus_7027#1 ------------------------CTGAGTAATCTCCCATAT-----ACCTCTTCGTGAC 31
* * * ** ** ***** *******
consensus_7027#0 TCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCATACCCCATATTTCTTCGAAT 420
consensus_7027#1 TCTAATGCTCTGTCACAGCAAAATTCACCTATCGTCATCGTACCCCATATTTCTTCGAAT 91
*************************************** ********************
consensus_7027#0 ATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAAC 480
consensus_7027#1 ATTTCGGTTTCAACTGTCTCCAAAACATTTCCCAAGGTACCCGATCTTGTAGTATCAAAC 151
************************************************************
consensus_7027#0 AGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTT 540
consensus_7027#1 AGTAGTCCACGTACAAGTTTACCGGTTGTTTCCAGCCCTAAATCTAGCCCTCATTTAGTT 211
************************************************************
consensus_7027#0 CCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAAT 600
consensus_7027#1 CCTATCACAAGACACTGTCAATCGCTTCCTACAGCTCACTCACCCACACAACCAATTAAT 271
************************************************************
consensus_7027#0 CGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCCCAAAGTTCAATTAATTCGAAAACT 660
consensus_7027#1 CGCCCCAATTTTCGAATTACCCCATCTTCAGCTGCTCAAAGTTCAATTAATTCGAAAACT 331
*********************************** ************************
consensus_7027#0 GTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTAT 720
consensus_7027#1 GTAAATACTAAGACTCCAGTAACTGTTTGTGTGGATACTGTAACTTCTCGCTTCTCGTAT 391
************************************************************
consensus_7027#0 GTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACC 780
consensus_7027#1 GTCGTTCAATCAACCACAGCGTCTATATCTCCAAATTCGCTAGTAGTTCCTGTGGCAACC 451
************************************************************
consensus_7027#0 TCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATA 840
consensus_7027#1 TCAACATTTCAAAATTCACAGTTAAATCGAACACCTGTTTTACAGAATGAAGCTATAATA 511
************************************************************
consensus_7027#0 GGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC 890
consensus_7027#1 GGTCGAACAGCTAATCCGGGTGTACCTCTGCGTCTTGTTTCATCTAGTTC 561
**************************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||