These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 781 fasta sequence [CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAACCGTATTGTTTATGGTATAA-ATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTCTGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATACGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCATAAAGCTTTATTTAACCAACT] [+] EMBL CD191686 [CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAACCGTATTGTTTATGGTATAA ATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAAT ATGATGAAGAT ] [-] EMBL CD096643 [ tgGGTATAANCCAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCAACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATCGTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGGTGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAAAATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGATGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTCTGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATT ] [+] EMBL CD165396 [ GAATCGAATAATGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTCTGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATACGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCATAAAGCTTTATTTAACCAACT] consensusID : consensus_7029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGATACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGGTGAGATCCATGTTTTTGTAATTTACCTCCTAGCTCATGAACTGTATATTAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTGAGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG] [+] EMBL CD156136 [GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGATACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAGTGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGTAAAACAAATTTTAGATGGTGAGATCCATGTTTTTGTAATTTACCTCCTAGCTCATGAACTGTATATTAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTGAGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7029#0 ------------------------------------------------------------ consensus_7029#1 GAATGATGTTACAATGGAAGAACTAAATGATGTGAACACTGACAAGTGTACTGATGAGAT 60 consensus_7029#0 --------------------CTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAG 40 consensus_7029#1 ACGTGTATCTTCAGAAGAGCCTATTGCAGGATTTCTTGTCCCGGCTGGATTTCAGGAAAG 120 **************************************** consensus_7029#0 TGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGT 100 consensus_7029#1 TGGAAACGTGCAAAAGAAGAACCAAGATCCATCACTGTCGAAGAGTGCACATATGCAAGT 180 ************************************************************ consensus_7029#0 AAAACAAATTTTAGATGATATTGAATGGAAATCTACAACTGCATCATTAGTCAACTGGAA 160 consensus_7029#1 AAAACAAATTTTAGATGGT--------GAGATCCATGTTTTTGTAATTTACCTCCTAG-- 230 ***************** * ** *** * * * *** * ** * consensus_7029#0 CCGTATTGTTTATGGTATAAATAATAATACAAATGAAATTCCCTCTAAAAATTCTAATCA 220 consensus_7029#1 ----CTCATGAACTGTATAT-TAGTTGTAGTAAGTAAGTACTTGTTGATTGTTAATACTG 285 * * * ***** ** * ** ** ** * * * * ** * consensus_7029#0 ACCAATCATTGGAGATCATGATTTTACTCTTTGTTCAATTCATAAATCAACTGTATTATC 280 consensus_7029#1 AGGATTCATAGGAATTTTTCAGTTTGAAGTTGATTTTCATCACAAATG------------ 333 * * **** *** * * * *** ** ** *** **** consensus_7029#0 GTGGGAGGATTCCGCATCTCATGATTTAATTCGTAATCTATTTACCACTGGTCAATGGGG 340 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGAAAATGAAGATGCTCAAACATTATTAGAAAAAGATGCCAAAGCACGTGAAGAATTAAA 400 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 AATGAATGAAGTTAAAAAATATGCTGCCGCATCTGGTAGTCGTGTACAGCATACTTACGA 460 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGGAAAACAATCATTTCATGATAATGATTCAGATGATTTTGATAGAGTAGAGAACAATTC 520 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGATGACTATGGTGATGATAGTGATGATGATGATGATGTTAATGACAGTGAATCGAATAA 580 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGATGAAGATGGTTTTAATCATGAGTCAGATGATGAAAATATTTTTCATGATTCAAATTC 640 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TGAGGACGACATTAACAATAAAAGTGTTACATCAAAAGACTTAAATTTGGAAAGTGAATA 700 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 CGATAAGAATTTACTACGACCAACTAAAGGGCAAAAAATATTAGAGAAAAGACAACGTCA 760 consensus_7029#1 ------------------------------------------------------------ consensus_7029#0 TAAAGCTTTATTTAACCAACT 781 consensus_7029#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||