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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[AGTGAACCACTGACAGTTAGAACAAAACTATGCCAACCACCTGCAACTATACGTCGGACAGGTAAACCGGAAAGACACAGAATTTGTTGAGGTATTGATACAGATTGTTCTGAACTATAACCTAAACCTACTTGGCCTTTAAGATTGGAACCGAATGCGAATACACGAGCAGTATCTGTTAAGACAAGTGAGTGTTCTACACCTAAGCTAACCTGAACAACTTTATGATCCGATAGTGTTCGAACTAGCTTAACTCCTGTGTCATCTCCTTCACGACCAAGTTGTCCATTGGAGTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGTCCGTGACCGAACTGCTGAAACTCATTGCGTGTTGAGTANAGACACGTTGATGGTTTCTTCAGCTACAGAAGAATTGTTTGCGTGGGGTTCGTGCGAAGAAAGGACACTACTTTAGATAAAAATGATGCTTACCAGATTTCTATCCCAAAAGCATTAGATGTCCGGGAATCTACCAACAT]
[+] EMBL CD096710 [AGTGAACCACTGACAGTTAGAACAAAACTATGCCAACCACCTGCAACTATACGTCGGACAGGTAAACCGGAAAGACACAGAATTTGTTGAGGTATTGATACAGATTGTTCTGAACTATAACCTAAACCTACTTGGCCTTTAAGATTGGAACCGAATGCGAATACACGAGCAGTATCTGTTAAGACAAGTGAGTGTTCTACACCTAAGCTAACCTGAACAACTTTATGATCCGATAGTGTTCGAACTAGCTTAACTCCTGTGTCATCTCCTTCACGACCAAGTTGTCCATTGGAGTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGT ]
[+] EMBL CD194264 [ CAGTTAGAACAAAACTATGCCAACCACCTGCAACTATACGTCGGACAGGTAAACCGGAAAGACACAGAATTTGTTGAGGTATTGATACAGATTGTTCTGAACTATAACCTAAACCAAATTGGCCTTTAAGATTGGAACCGAATGCGAATACACGAGCAGTATCTGTTAAGACAAGTGTGTGTTCTACACCTAAGCTAACCTGAACAACTTTATGATCCGATAGTGCTCGAACTAGCTTAACTCCTGTGTCATCTCCTTCACGACCAAGTTGTCCATTGGAGTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGTCCGTGACCGAACTGCTGAAACTCATTGCGTGTTGAGTANAGACACGTTGATGGTTTCTTCAGCTACAGAAGAATTGTTTGCGTGGGGTTCGTGCGAAGAAAGGACACTACTTTAGATAAAAATGATGCTTACCAGATTTCTATCCCAAAAGCATTAGATGTCCGGGAATCTACCAACAT]
consensusID : consensus_7034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 457 fasta sequence
[TCACGACCAAGTTGTCCATTGGAGTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGTCCGTGACCTAACTGCTGAAACTCATTGCACCCACAGCTGTATACTTCCCCGTCAATAGTTAGAAAGACTGTATGTGTGTATCCACAAGTGATTTGTATCAATGTTGGTAGATTCCGGACATCTAATGCTTTTGNGATAAG-ATCTGGT-AGCATCATTTTTATCTAAAGTTAGTTGTCCTTCTTCGCACGAACCCCACGCAAACAATTCTTCTGTAGCTGAAGAAACCATCAACGTGTCTTTACTAATACAGTGGATGGTTAGCACGAACCAACACGCAATCTGACTGTACCACGAAAACGTGCCAGGA]
[+] EMBL CD196327 [TCACGACCAAGTTGTCCATTGGAGTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGTCCGTGACCTAACTGCTGAAACTCATTGCACCCACAGCTGTATACTTCCCCGTCAATAGTTAGAAAGACTGTATGTGTGTATCCACAAGTGATTTGTATCAATGTTGGTAGATTCCGGACATCTAATGCTTTTGNGATAAG ATCTGGT AGCATCATTTTTATCTAA ]
[-] EMBL CD115911 [ GTTGCAGCCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCTACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGTCCGTGACCTAACTGCTGAAACTCATTGCACCCACAGCTGTATACTTCCCCGTCAATAGTTAGAAAGACTGTATGTGTGTATCCACAAGTGATTTGTATCAATGTTGGTAGATTCCGGACATCTAATGCTTTTGGGATAAGAATCTGGTAAGCATCATTTTTATCTAAAGTTAGTTGTCCTTCTTCGCACGAACCCCACGCAAACAATTCTTCTGTAGCTGAAGAAACCATCAACGTGTCTTTACTAATACAGTGGATGGTTAGCACGAACCAACACGCAATCTGACTGTACCACGAAAACGTGCCAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7034#0 AGTGAACCACTGACAGTTAGAACAAAACTATGCCAACCACCTGCAACTATACGTCGGACA 60
consensus_7034#1 ------------------------------------------------------------
consensus_7034#0 GGTAAACCGGAAAGACACAGAATTTGTTGAGGTATTGATACAGATTGTTCTGAACTATAA 120
consensus_7034#1 ------------------------------------------------------------
consensus_7034#0 CCTAAACCTACTTGGCCTTTAAGATTGGAACCGAATGCGAATACACGAGCAGTATCTGTT 180
consensus_7034#1 ------------------------------------------------------------
consensus_7034#0 AAGACAAGTGAGTGTTCTACACCTAAGCTAACCTGAACAACTTTATGATCCGATAGTGTT 240
consensus_7034#1 ------------------------------------------------------------
consensus_7034#0 CGAACTAGCTTAACTCCTGTGTCATCTCCTTCACGACCAAGTTGTCCATTGGAGTTGCAG 300
consensus_7034#1 ------------------------------TCACGACCAAGTTGTCCATTGGAGTTGCAG 30
******************************
consensus_7034#0 CCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCT 360
consensus_7034#1 CCCCAAGTAAATAAAAGTCCATTATAGGTAATGGCAGCATTATGGTATGCTCCACAAGCT 90
************************************************************
consensus_7034#0 ACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGT 420
consensus_7034#1 ACACTTATTATTCTGTAGTGTTCTAATGCAACTACTTTTGCTAACTGACCACCAGATTGT 150
************************************************************
consensus_7034#0 CCGTGACCGAACTGCTGAAACTCATTGCGT-----GTTGAGTANAGACACGTTGATGGTT 475
consensus_7034#1 CCGTGACCTAACTGCTGAAACTCATTGCACCCACAGCTGTATACTTCCCCGTCAATAGTT 210
******** ******************* * ** ** * *** ** ***
consensus_7034#0 TCTTCAGCTACAGAAGAATTGTTTGCGTGGGGTTCGTGCGAA----GAAAG------GAC 525
consensus_7034#1 AGAAAGACTGTATGTGTGT-ATCCACAAGTGATTTGTATCAATGTTGGTAGATTCCGGAC 269
** * * * * * * * ** ** ** * ** ***
consensus_7034#0 AC----TACTTTAGATAAAAATGATGCTTACCAGATTTCTATCCCAAAAGCATTAGATGT 581
consensus_7034#1 ATCTAATGCTTTTGNGATAAGATCTGGTAGCATCATTTTTATCTAAAGTTAGTTGTCCTT 329
* * **** * * ** ** * * **** **** ** ** *
consensus_7034#0 CCGGGAATCTACCA-ACAT----------------------------------------- 599
consensus_7034#1 CTTCGCACGAACCCCACGCAAACAATTCTTCTGTAGCTGAAGAAACCATCAACGTGTCTT 389
* * * *** **
consensus_7034#0 ------------------------------------------------------------
consensus_7034#1 TACTAATACAGTGGATGGTTAGCACGAACCAACACGCAATCTGACTGTACCACGAAAACG 449
consensus_7034#0 --------
consensus_7034#1 TGCCAGGA 457
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||