cluster # 7035

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Schistosoma mansoni
cluster # 7035 cluster # 7035 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7035#0 length = 769 sequences # 3

consensus_7035#1 length = 156 sequences # 1

consensusID : consensus_7035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 769
fasta sequence

                              [CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTCGGCAAACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAAGAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAATGTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAATACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAATATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATAGTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAGAATGAATTNGACATTTTTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC]

[+] EMBL CD119718             [CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAAGCTT TGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD119709             [                   CAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTC                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD118475             [                             GTCTGAACGAGTTCAGTCTATAGCTTCTGGTATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTAATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCATACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACTGCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTTGATGAAGAGAGAAAAGTGAATGAGGCAAAGAATGAGTCATTATTCACATCTTGTCGGCAAACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAAGAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAATGTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAATACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAATATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATAGTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAGAATGAATTNGACATTTTTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC]




>consensus_7035#0
CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGT
ATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTA
ATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCA
TACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACT
GCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTT
GATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTCGGCAA
ACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAA
GAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAAT
GTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAAT
ACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAA
TATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATA
GTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAGAATGAATTNGACATTTTT
CGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC

consensusID : consensus_7035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [ATGGATCATCTATAGTTCATTCAAATTCACTTGGTGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTGATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTACCTGCTGGTATGCGTAAAGAGATT]

[+] EMBL CD162238             [ATGGATCATCTATAGTTCATTCAAATTCACTTGGTGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTGATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTACCTGCTGGTATGCGTAAAGAGATT]




>consensus_7035#1
ATGGATCATCTATAGTTCATTCAAATTCACTTGGTGTTGGCTATGATGCTACTAGCGGTG
GATTTGAGTTTTGATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTC
GACGATGATCTACCTGCTGGTATGCGTAAAGAGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7035#0      CAGCTTCAATCACATGTTTCAGTGGTTATGTCTGAACGAGTTCAGTCTATAGCTTCTGGT 60
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      ATATACAAAGAGTTTGAAACTATGATTGAGGCTTATGGATTACCCGTTGTTGAGCGTTTA 120
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      ATGCCATTAATAATTAGCCTGCTGGAAAATTTGGATGAACTATATAAAGATCAATCTGCA 180
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      TACCATGCTGAAGTAAGACAATTACGTGAAGAGAATGAGCATATTTATGACCAACTTACT 240
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      GCTGAAAAGGCTGCTCGAAAACAGTCCGAACTGCGTTTGCTAAATGCAGAGGATGCTTTT 300
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      GATGAAGAGAGAAAAGTGAATGAGGCAAAAAATGAGTCATTATTCACATCTTGTCGGCAA 360
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      ACGGAATTGAGACTTCAATTGGCTAAAGATCAAGTTTCACGTTTAGAAGTGAAAGAACAA 420
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      GAATGGAAAAAGGAAGAGAATCGTTTACATGAACATCTTAATGAATTAATACGTTCTAAT 480
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      GTTGAATTAACTGAACAAATCAAATTTATTAATAATAATAATCAAGATCAATCAAGAAAT 540
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      ACATTAAATAATCATATTCATAAACATTCACCACGTAAACTATCCATGAATTCACCTAAA 600
consensus_7035#1      ------------------------------------------------------------
                                                                                  

consensus_7035#0      TATAATNTAACTGGATCAACTAATCATGATCAAAGTTCAACAATAGATGGATCATCTATA 660
consensus_7035#1      ----------------------------------------------ATGGATCATCTATA 14
                                                                    **************

consensus_7035#0      GTTCATTCAAATTCACTTGGGTGTTGGCTATGATGCTACTAG-AATGAATTNGACATTT- 718
consensus_7035#1      GTTCATTCAAATTCACTTGG-TGTTGGCTATGATGCTACTAGCGGTGGATTTGAGTTTTG 73
                      ******************** *********************   ** *** **  *** 

consensus_7035#0      -------TTCGGATATTTTTCCCGTTATTTACAGTGGATTTGAGGTTGATGAACTCCC-- 769
consensus_7035#1      ATGAACTCCCAAATACTTTGGAGTCGGAAAGTGGTGGTTTAAATGTCGACGATGATCTAC 133
                               *  *** ***              **** **  * ** ** **    *   

consensus_7035#0      -----------------------
consensus_7035#1      CTGCTGGTATGCGTAAAGAGATT 156