cluster # 7037

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Schistosoma mansoni
cluster # 7037 cluster # 7037 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7037#0 length = 614 sequences # 3

consensus_7037#1 length = 416 sequences # 1

consensusID : consensus_7037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 614
fasta sequence

                              [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCC-TTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCATAGAGCGGAAGAAAT]

[+] EMBL CD160726             [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCC TTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACGTAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCATAGAGCGGAAGAAAT]
[+] EMBL CD178440             [TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAGCTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTTTCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAATTGAGCAGGATGAACAAGG                                                       ]
[-] EMBL CD165243             [                                                                                                                                                                                                                                                                                                                                                           GTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATTTATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTT                                                                                                                                      ]




>consensus_7037#0
TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGA
CATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACG
TAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATAC
ATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTC
GTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATA
ACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTC
ACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATT
TATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTT
TCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAA
TTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCAT
AGAGCGGAAGAAAT

consensusID : consensus_7037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 416
fasta sequence

                              [TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGCTATCTGAAT]

[-] EMBL CD153712             [TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGCTATCTGAAT]




>consensus_7037#1
TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGACATTTTTATTCCA
GCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACGTAAACGGCCAGAA
CGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATACATAACCTGCAATG
GTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTCGTTACACGTACGT
TCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATAACTTGGTAATTCA
TTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTCACATAAATCAACA
ATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGCTATCTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7037#0      TTCGATTTCTGACTGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGA 60
consensus_7037#1      -------------TGTTTACACACTGATGTTGTACTATTGCTAGATGACTGAATTGTGGA 47
                                   ***********************************************

consensus_7037#0      CATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACG 120
consensus_7037#1      CATTTTTATTCCAGCTACACCCTTTTTTTCGCAGGTTAGCAAATCCCGTTTAATTCGACG 107
                      ************************************************************

consensus_7037#0      TAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATAC 180
consensus_7037#1      TAAACGGCCAGAACGATCTTTCCGTATTTGAGTCATATTTTTCAAATCTATGCTGTATAC 167
                      ************************************************************

consensus_7037#0      ATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTC 240
consensus_7037#1      ATAACCTGCAATGGTCAATTCATATGACGATAATTGTTTATTAAATGCATTCTCCAATTC 227
                      ************************************************************

consensus_7037#0      GTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGATCCAAGAATA 300
consensus_7037#1      GTTACACGTACGTTCATCGTATTGCCACCAACCTTGAAAACCTTCATAGAACCAAGAATA 287
                      ************************************************** *********

consensus_7037#0      ACTTGGTAATTCATTAGAGTTTGAAGCATTGACTGATTGAGGTAAAGTTGACAAGCGTTC 360
consensus_7037#1      ACTTGGTAATTCATTAGAGTTTGAAGCATAGACTGATTGAGGTAAAGTTGACAAGCGTTC 347
                      ***************************** ******************************

consensus_7037#0      ACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCACGTAGATCGCAAACATT 420
consensus_7037#1      ACATAAATCAACAATATGACTTAATTTATCTTGATCGTTTTCGAGGAAGNNCCAGGCTGC 407
                      ******************************************  * *     **  *   

consensus_7037#0      TATTAACTTGGGATTATCGAAAAAACGCGATGAGAATCTACTGCGGCACATAGGACATTT 480
consensus_7037#1      TATCTGAAT--------------------------------------------------- 416
                      ***     *                                                   

consensus_7037#0      TCGCCTGTGGAAGGCACAACCTTTAATGCACAAAAAGCAAAATATATGACCACATGGTAA 540
consensus_7037#1      ------------------------------------------------------------
                                                                                  

consensus_7037#0      TTGAGCAGGATGAACAAGGTTTTGCAAGCATATGCTGCACTCTAGACTATCAACTGTCAT 600
consensus_7037#1      ------------------------------------------------------------
                                                                                  

consensus_7037#0      AGAGCGGAAGAAAT 614
consensus_7037#1      --------------