cluster # 7043

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Schistosoma mansoni
cluster # 7043 cluster # 7043 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7043#0 length = 558 sequences # 2

consensus_7043#1 length = 334 sequences # 2

consensusID : consensus_7043#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 558
fasta sequence

                              [TATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTAAAATTGTTAAGAAAGAAAAATTGAGTGGTCCTTGACACAAAATTCCCTAACCAAACTTCGTAAAAACATGTTTCACAACTAGGCTGTATTGGCAATCAAGTGTATTCAATCCACGAAGCTACTTATAATTTGCCTGTTAGTTTTTGATATGAGAATATAGCATTTAAAGTGGAGAGGATAAAAACAGAGTTCTTTGTCATATTGGTTAAGGAGATTTACACAACAGAAAAAGGAGTTATCATCAGTCATCAAAACATGTAGTCCTGATGTACATCATATAGCTCTGGGTAATCTAGCATTTAGAAAATCATGTTAAGAACTATCGACCACGCAAATACATAATCTTTACAAACTTTGCGGATGAGTATCATAGCTAACCTGCAAAAGTTTTGCGTAACAGCGATGGTGTCAGTTAAGTTAAGAACAACATGCCA]

[+] EMBL CD163359             [TATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTAAAATTGTTAAGAAAGAAAAATTGAGTGGTCCTTGACACAAAATTCCCTAACCAAACTTCGTAAAAACATGTTTCACAACTAGGCTGTATTGGCAATCAAGTGTATTCAATCCACGAAGCTACTTATAATTTGCCTGTTAGTTTTTGATATGAGAATATAGCATTTAAAGTGGAGAGGATAAAAACAGAGTTCTTTGTCATATTGGTTAAGGAGATTTACACAACAGAAAAAGGAGTTATCATCAGTCATCAAAACATGTAGTCCTGATGTACATC                                                                                                                                                               ]
[-] EMBL CD096797             [                                                                                                                                                                      TTCCCTAACCAAACTTCGTAAAAACATGTTTCACAACTAGGCTGTATTGGCAATCAAGTGTATTCAATCCACGAAGCTACTTATAATTTGCCTGTTAGTTTTTGATATGAGAATATAGCATTTAAAGTGGAGAGGATAAAAACAGAGTTCTTTGTCATATTGGTTAAGGAGATTTACACAACAGAAAAAGGAGTTATCATCAGTCATCAAAACATGTAGTCTTGATGTACATCATATAGCTCTGGGTAATCTAGCATTTAGAAAATCATGTTAAGAACTATCGACCACGCAAATACATAATCTTTACAAACTTTGCGGATGAGTATCATAGCTAACCTGCAAAAGTTTTGCGTAACAGCGATGGTGTCAGTTAAGTTAAGAACAACATGCCA]




>consensus_7043#0
TATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCT
TTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGA
ACTAAAATTGTTAAGAAAGAAAAATTGAGTGGTCCTTGACACAAAATTCCCTAACCAAAC
TTCGTAAAAACATGTTTCACAACTAGGCTGTATTGGCAATCAAGTGTATTCAATCCACGA
AGCTACTTATAATTTGCCTGTTAGTTTTTGATATGAGAATATAGCATTTAAAGTGGAGAG
GATAAAAACAGAGTTCTTTGTCATATTGGTTAAGGAGATTTACACAACAGAAAAAGGAGT
TATCATCAGTCATCAAAACATGTAGTCCTGATGTACATCATATAGCTCTGGGTAATCTAG
CATTTAGAAAATCATGTTAAGAACTATCGACCACGCAAATACATAATCTTTACAAACTTT
GCGGATGAGTATCATAGCTAACCTGCAAAAGTTTTGCGTAACAGCGATGGTGTCAGTTAA
GTTAAGAACAACATGCCA

consensusID : consensus_7043#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence

                              [GAGACTCTCCCCTGGTATTAGATTGATGCATCTTTTCGGGAGACTGATTTGTAGAAGTGCAAGTTGAGCAATATGAAGACGAACGTGGAGAAGATGAGGATGAACAAGATGATGATGAAGATGAAGGGGCATCTGTTTAGTGCTCGGAGAGATTTATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTGCAAAAGTTTTGCGCAACAGCGATGGGGTCAGTTAAGTTAAGAACAACATGCCACCA]

[+] EMBL CD180589             [GAGACTCTCCCCTGGTATTAGATTGATGCATCTTTTCGGGAGACTGATTTGTAGAAGTGCAAGTTGAGCAATATGAAGACGAACGTGGAGAAGATGAGGATGAACAAGATGATGATGAAGATGAAGGGGCATCTGTTTAGTGCTCGGAGAGATTTATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTGCAAAAGTTTTGCGCAACAGCGATGGGGTCA                          ]
[+] EMBL CD132652             [                        GATGCATCTTTTCGGGAGACTGATTTGTAGAAGTGCAAGTTGAGCAATATGAAGACGAACGTGAAGAAGATGAGGATGAACAAGATGATGATGAAGATGAAGGGGCATCTGGAAAGTGCTCGGAGAGATTTATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTGCAAAAGTTTTGCGTAACAGCGATGGTGTCAGTTAAGTTAAGAACAACATGCCACCA]




>consensus_7043#1
GAGACTCTCCCCTGGTATTAGATTGATGCATCTTTTCGGGAGACTGATTTGTAGAAGTGC
AAGTTGAGCAATATGAAGACGAACGTGGAGAAGATGAGGATGAACAAGATGATGATGAAG
ATGAAGGGGCATCTGTTTAGTGCTCGGAGAGATTTATGTTGTCTGTGATCTTAGCTAAAT
CAGGGCGATTAGTTCTGAGAGCAGATAACCACCTTTTAGCAAATTTTGGTCTTTTCCGTG
CAGTTTTGTGCCATACAATAGGAAAGTTAGCAGAACTGCAAAAGTTTTGCGCAACAGCGA
TGGGGTCAGTTAAGTTAAGAACAACATGCCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7043#0      TATGTTGTCTGTGATCTTAGCTAAATCAGGGCGATTAGTTCTGAGAGCAGATAACCACCT 60
consensus_7043#1      ------------------------------------------------------------
                                                                                  

consensus_7043#0      TTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCATACAATAGGAAAGTTAGCAGA 120
consensus_7043#1      ------------------------------------------------------------
                                                                                  

consensus_7043#0      ACTAAAATTGTTAAGAAAGAAAAATTGAGTGGTCCTTGACACAAAATTCCCTAACCAAAC 180
consensus_7043#1      ------------------------------------------------------------
                                                                                  

consensus_7043#0      TTCGTAAAAACATGTTTCACAACTAGGCTGTATTGGCAATCAAGTG-TATTCAATCCACG 239
consensus_7043#1      --------------------------------GAGACTCTCCCCTGGTATTAGATTGATG 28
                                                        * *  **   ** ****  **  * *

consensus_7043#0      AAGCTACTTATAA--TTTGCCTGTTAGTTTTTGATATGAG-AATATAGCATTTAAAGTGG 296
consensus_7043#1      CATCTTTTCGGGAGACTGATTTGTAGAAGTGCAAGTTGAGCAATATGAAGACGAACGTGG 88
                       * **  *    *   *    ***     *   *  **** *****       ** ****

consensus_7043#0      AGAGGATAAAAACAGAGTTCTTTGTCATATTGGTTAAGGAG-ATTTACACAACAGAAAAA 355
consensus_7043#1      AGAAGATGAGGATGAACAAGATGATGATGAAGATGAAGGGGCATCTGTTTAGTGCTCGGA 148
                      *** *** *  *   *     *  * **   * * **** * ** *    *        *

consensus_7043#0      GGAGTTATCATCAGTCATCAAAACATGTAGTCCTGATGTACATCATATAGCTCTGGGTAA 415
consensus_7043#1      GAGATT----TATGTTGTCTGTGATCTTAG--CTAAATCAGGGCGATTAGTTCTGAG--- 199
                      *   **    *  **  **        ***  ** *   *   *   *** **** *   

consensus_7043#0      TCTAGCATTTAGAAAATCATGTTAAGAACTATCGACCACGCAAATACATAATCTTTACAA 475
consensus_7043#1      ---AGCAGATAACCA--CCTTTTAGCAAATTTTGGTCTTTTCCGTGCAGTTTTGTGCCAT 254
                         ****  **   *  * * ***  ** * * *  *       * **   *  *  ** 

consensus_7043#0      ACTTTGCGGATGAGTATCATAGCTAACCTGCAAAAGTTTTGCGTAACAGCGATGGTGTCA 535
consensus_7043#1      AC------AATAGGAAAGTTAGCAGAACTGCAAAAGTTTTGCGCAACAGCGATGGGGTCA 308
                      **       **  * *   ****  * **************** *********** ****

consensus_7043#0      GTTAAGTTAAGAACAACATGCCA--- 558
consensus_7043#1      GTTAAGTTAAGAACAACATGCCACCA 334
                      ***********************