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Schistosoma mansoni
cluster # 7046 cluster # 7046       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7046#0 length = 672 sequences # 2  
consensus_7046#1 length = 372 sequences # 2  

consensusID : consensus_7046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 672
fasta sequence
                              [CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT]

[+] EMBL CD164626             [CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT]
[+] EMBL CD096859             [                                                                                                                                                                                                                                                                                                                                                                                                 CAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATAAATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGTATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCA                  ]


>consensus_7046#0 CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACT GTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGA AGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTA ACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGA ATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGC ATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTT GCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGG TTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTA TTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTC CAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGT TTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACA AATAGGGATCAT



consensusID : consensus_7046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 372
fasta sequence
                              [CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]

[+] EMBL CD131995             [CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]
[+] EMBL CD131951             [                   CAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]


>consensus_7046#1 CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCA TGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATA ATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAA TTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATG TTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAA ATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACA ATATTGTGAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7046#0      CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACT 60
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      GTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGA 120
consensus_7046#1      ------------------------------CACCTAGTGGCTACAACTACAACAATAAAT 30
                                                        ***   **  *   *   *  *    

consensus_7046#0      AGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTA 180
consensus_7046#1      GATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAA--ACTGAGAATTAATA 88
                         * ** *    ***      *   * ****   *          ** * **  *  **

consensus_7046#0      ACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGA 240
consensus_7046#1      AAAACTAGAAAGTAATAA--ATAAACGTTTGATAATAGTCT------AGAATTTCACAGC 140
                      * * ** *  *  ** **  **  ** ***  *  * *  *      ***  **** ** 

consensus_7046#0      ATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGC 300
consensus_7046#1      GGT---GCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATT---ACTAAACTACTG 194
                        *    ** **  **  *       * *    *  *    ** *    **   * *   

consensus_7046#0      ATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTT 360
consensus_7046#1      ACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTT 254
                      *     *  **   *   * * *    *** ****      *  ***  * *  *   **

consensus_7046#0      GCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGG 420
consensus_7046#1      AAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTA----AAAATTTAGAAAA 310
                                * *  * **        * **    ***  *      *** ***  **  

consensus_7046#0      TTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTA 480
consensus_7046#1      ACACCATAGT-TATGCTAAATATCTGAAAACTCGGGGTAATAG-ATGGA---ACAATATT 365
                         **** ** ***  *       *  * **  *  *  * *  *** *   *   * * 

consensus_7046#0      TTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTC 540
consensus_7046#1      GTGAGAA----------------------------------------------------- 372
                       * ****                                                     

consensus_7046#0      CAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGT 600
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      TTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACA 660
consensus_7046#1      ------------------------------------------------------------
                                                                                  

consensus_7046#0      AATAGGGATCAT 672
consensus_7046#1      ------------
                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)