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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence
[CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT]
[+] EMBL CD164626 [CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT]
[+] EMBL CD096859 [ CAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATAAATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGTATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCA ]
consensusID : consensus_7046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 372 fasta sequence
[CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]
[+] EMBL CD131995 [CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]
[+] EMBL CD131951 [ CAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7046#0 CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACT 60
consensus_7046#1 ------------------------------------------------------------
consensus_7046#0 GTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGA 120
consensus_7046#1 ------------------------------CACCTAGTGGCTACAACTACAACAATAAAT 30
*** ** * * * *
consensus_7046#0 AGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTA 180
consensus_7046#1 GATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAA--ACTGAGAATTAATA 88
* ** * *** * * **** * ** * ** * **
consensus_7046#0 ACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGA 240
consensus_7046#1 AAAACTAGAAAGTAATAA--ATAAACGTTTGATAATAGTCT------AGAATTTCACAGC 140
* * ** * * ** ** ** ** *** * * * * *** **** **
consensus_7046#0 ATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGC 300
consensus_7046#1 GGT---GCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATT---ACTAAACTACTG 194
* ** ** ** * * * * * ** * ** * *
consensus_7046#0 ATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTT 360
consensus_7046#1 ACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTT 254
* * ** * * * * *** **** * *** * * * **
consensus_7046#0 GCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGG 420
consensus_7046#1 AAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTA----AAAATTTAGAAAA 310
* * * ** * ** *** * *** *** **
consensus_7046#0 TTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTA 480
consensus_7046#1 ACACCATAGT-TATGCTAAATATCTGAAAACTCGGGGTAATAG-ATGGA---ACAATATT 365
**** ** *** * * * ** * * * * *** * * * *
consensus_7046#0 TTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTC 540
consensus_7046#1 GTGAGAA----------------------------------------------------- 372
* ****
consensus_7046#0 CAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGT 600
consensus_7046#1 ------------------------------------------------------------
consensus_7046#0 TTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACA 660
consensus_7046#1 ------------------------------------------------------------
consensus_7046#0 AATAGGGATCAT 672
consensus_7046#1 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||