These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT] [+] EMBL CD164626 [CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACTGTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGAAGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTAACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGAATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGCATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTTGCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACAAATAGGGATCAT] [+] EMBL CD096859 [ CAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGGTTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATAAATCATGTATGTATGGTTTATTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGTATTCCAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGTTTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCA ] consensusID : consensus_7046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 372 fasta sequence [CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA] [+] EMBL CD131995 [CACCTAGTGGCTACAACTACAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA] [+] EMBL CD131951 [ CAACAATAAATGATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAAACTGAGAATTAATAAAAACTAGAAAGTAATAAATAAACGTTTGATAATAGTCTAGAATTTCACAGCGGTGCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATTACTAAACTACTGACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTTAAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTAAAAATTTAGAAAAACACCATAGTTATGCTAAATATCTGAAAACTCGGGGTAATAGATGGAACAATATTGTGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7046#0 CGCTTACCATCTAAAAGTATCTCTTATGAACTAGTACCATATATAACTGAAGTTCATACT 60 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 GTGGTGGGAATTATCCTGGATTATTTCCGATGGTTAGAAACTGGAGTCATGGCTTTTCGA 120 consensus_7046#1 ------------------------------CACCTAGTGGCTACAACTACAACAATAAAT 30 *** ** * * * * consensus_7046#0 AGCATGTCTCATTTAAAGCGGCTTTTAACATGGTTTTCACCTGGTTACCGTGATATGGTA 180 consensus_7046#1 GATAAGTTTTTCCTAAGATAATTCAGATCATGACGTGTGATCAA--ACTGAGAATTAATA 88 * ** * *** * * **** * ** * ** * ** consensus_7046#0 ACATCTGGTGATCAAGAACCATGGACATTTCGTGGTGGGTTGATAACAGAGCTTCAGAGA 240 consensus_7046#1 AAAACTAGAAAGTAATAA--ATAAACGTTTGATAATAGTCT------AGAATTTCACAGC 140 * * ** * * ** ** ** ** *** * * * * *** **** ** consensus_7046#0 ATTTTACCACTCGAATCTGCTCAAGATCTTTTCCCCGCGCCAAGTCGTGCTGCCCCAGGC 300 consensus_7046#1 GGT---GCAATCCTATACGGGATTAGTTTCAATCTTGTATTAATT---ACTAAACTACTG 194 * ** ** ** * * * * * ** * ** * * consensus_7046#0 ATGACTACCATTCCTTGTTTGAATTGGACTGATAATGCAGCAAGTGTATACACTCCACTT 360 consensus_7046#1 ACATTCAATATGTATAAATAGTAGAAAACTTATAAAAACTTACATGTTAAAAGCCGCTTT 254 * * ** * * * * *** **** * *** * * * ** consensus_7046#0 GCTCCTTCTGTTCCCCCAATGATTCCAATTCAGCCTTCAATCTTCCCAAATTTTTCAAGG 420 consensus_7046#1 AAATGAGACATGCTTCGAAAAGCCATGACTCCAGTTTCTGTTA----AAAATTTAGAAAA 310 * * * ** * ** *** * *** *** ** consensus_7046#0 TTTCCATCGTATATAGTTCGACCATATAGACCTGAAGATACATCATGTATGTATGGTTTA 480 consensus_7046#1 ACACCATAGT-TATGCTAAATATCTGAAAACTCGGGGTAATAG-ATGGA---ACAATATT 365 **** ** *** * * * ** * * * * *** * * * * consensus_7046#0 TTCAGAAAACTACTTTTGGCTCGTGTTGGTTTACCGGAAAACGCTCTCCCATTAGAATTC 540 consensus_7046#1 GTGAGAA----------------------------------------------------- 372 * **** consensus_7046#0 CAGGATTTACCAGGTGACAAGTATTTACTTCCATTTCTACAACATTCACCTGAAAGTTGT 600 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 TTCATGGTTATGGGTCCACCTTTCCTGCAGACCTCAGTTGATTGCTCTAGTTCAGTCACA 660 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 AATAGGGATCAT 672 consensus_7046#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||