|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence
[GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTAATTCATGGCTTCATTTGCGGTTCATTATTTCGTCATTGGATTGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNTAAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTTTTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGCATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTCTGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGACTACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCTATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA]
[+] EMBL CD082469 [GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTAATTCATGGCTTCATTTGCGGTTCATTATTTCGTCATTGGATTGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGAT ]
[+] EMBL AI977634 [ TGATTTTAGCCATTGTAGGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTTCCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCATCATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTTAATAGTTGTTCATTTAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATTTATCTGGNGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNTAAATATCATGTAATGAGTAGCTTTTG ]
[-] EMBL CD076068 [ TAATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAGCGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCCGTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTTTTGGGCATTTATCTGGGGAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTTTAAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTTTTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGCATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTCTGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGACTACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCTATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA]
consensusID : consensus_7061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence
[TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTGGTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATATTCTGATCTACATATCTATTCACCTTTCATAGCGACTGATCATTCCAATCAAACGAAATTTATGTAACGTCAAAATGTAACCCTGATAACTATATTTCACTATATATATATCATTCACAGACTAATATTTGATAGTTCTCTATAGTTATAGACAAATGAGTACTATGTATTATTCCACATTTCATAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGTGATTCATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTTGTGTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTTAAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATCTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGCTTTTGCACGTCTTACATGCATCA]
[-] EMBL CD062159 [TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTGGTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATATTCTGATCTACATATCTATTCACCTTTCATAGCGACTGATCATTCCAATCAAACGAAATTTATGTAACGTCAAAATGTAACCCTGATAACTATATTTCACTATATATATATCATTCACAGACTAATATTTGATAGTTCTCTATAGTTATAGACAAATGAGTACTATGTATTATTCCACATTTCATAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGTGATTCATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTTGTGTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTTAAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTCAATATATGTTCGTTTCTTTCTTTTGTATGTATCTATTGTTGGTATCTACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACTCTCACATTGCTTTTGCACGTCTTACATGCATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7061#0 GGATTCGTTCAAAGGCAAACTTATTTTCAAATATTCAACTCGTGTAGTTCAACTGTTTTA 60
consensus_7061#1 ----------TAGGACAAAAAAATACAATTATAACTTATATGTGTTTGTTATTTTGCTTG 50
* * **** ** *** * **** * * * **
consensus_7061#0 ATTCATGGCTTCATTTGCGGTT-CATTATTTCGTCATTGGATTGAT-TTTAGCCATTGTA 118
consensus_7061#1 GTTATAGATTTCTAAAACAAATACTTTATATTGAAGTTAGATTAATATTTACGCATAATA 110
** * *** * * * **** * * ** **** ** **** *** **
consensus_7061#0 GGCACATTTTCTATAAGCTACCTAATTTCGACATCAGACCATCATGCGTCTGTTATCTTT 178
consensus_7061#1 TTCTGATCTAC-ATAT-CTATTCACCTTTCATAGCGACTGATCATTC-----CAATCAAA 163
* ** * * *** *** * ** * * * ***** * ***
consensus_7061#0 CCATACATAAGTGATACTGGTGCTCTACCGCCTGAAAGCTGCGTATTTGGTCAACTGCTC 238
consensus_7061#1 CGAAATTTATGTAACGTCAAAATGTAAC--CCTGATAACT--ATATTTCACTATATATAT 219
* * * ** ** * ** ***** * ** ***** * *
consensus_7061#0 AATATATGTTCGTTTCTTTCTTTTGTATGTATTTATTGTTGGTATCTACATGAGTGCAAT 298
consensus_7061#1 ATCATTCACAGACTAATAT--TTGATAGTTCTCTATAGTTA-TAGACAAATGAGTACTAT 276
* ** * * * ** ** * * *** *** ** * ****** * **
consensus_7061#0 GTAATGTAC-ACACTTCAAGGACCTAACTCTCACATTGTTTTTGCACGTCTTACTTGCAT 357
consensus_7061#1 GTATTATTCCACATTTCA------TAAATGGTGGTTTTCTAATCTGTAATCCATTAGTGT 330
*** * * * *** **** *** * ** * * * * * *
consensus_7061#0 CATTGGCTGTCTAAGCGCACTGGGAATGTCGATTGTAGCTAATTTCCAGGAAGCATCTTT 417
consensus_7061#1 GATT---CATTTGTTTGCCTATAATTCGTAAATTGTTTCCATGCTTTTATTTGGATTTTT 387
*** * * ** ** ***** * * * * ** ***
consensus_7061#0 AATAGTTGTTCATTT-AATCGGTGCAATGATGACTTTCGGATTGGGAGTCGTATTTTCAG 476
consensus_7061#1 GT--GTTATCCATGTGAAGCGATTCTCTTGGACTTTTTAAATTAGCCGTTATATGTTTTT 445
*** * *** * ** ** * * * *** *** * ** *** **
consensus_7061#0 CGTTAGTCACCTATTCTACACGTAAACATTTGGAATACAATTTCAAAATATATGTATTCC 536
consensus_7061#1 AAATTTTGTTTTGTAACTCAGTGATACTGGTGCTCTACCGCCTGAAAGC-TGCGTATTTG 504
* * * * ** * ** ** *** * *** * *****
consensus_7061#0 GTTTAATCTTAACTATTTGCGGTTTTCTCGCGAATCTGGGAGTGTTCATTNTTGGGCATT 596
consensus_7061#1 GTCAACTGCTCAATATATGTTCGTTTCTTTCT--TTTGTATGTATCTATTGTTGG-TATC 561
** * * * * *** ** ***** * * ** ** * *** **** **
consensus_7061#0 TATCTGGG-GAAATCCACGGTCCATTCCCTAGAAAATGGGATCCATCTGAAACGGGTTNT 655
consensus_7061#1 TACATGAGTGCAATGTAATGTACACACTTCAAGGACCTAACT----CTCACATTGCTTTT 617
** ** * * *** * ** ** * * * * ** * * * ** *
consensus_7061#0 AAATATCATGTAATGAGTAGCTTTTGCGAATGGTTAATGTCCTTCACATTTTTACTGTTT 715
consensus_7061#1 GCACGTCTTACATGCATCA----------------------------------------- 636
* ** * * * *
consensus_7061#0 TTCGCTTCTATGATATTCGAATTGAGAAACTATGAGTTGGAATCGGTTAAAATAAGGCGC 775
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 ATAGTTATCGCGCCTGAAAACAATGAACAAGCACCTCTACTCGCTTAGGCCATCACTTTC 835
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 TGTTCTTATGTGACTATAATTCAGTGAATAAGAAAATACTTTGATCCATTTCATTAGGAC 895
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 TACAATTTTTTATCATACTACGTAACAGTCATCTTTTTTACTTAATACACTATGTAATCT 955
consensus_7061#1 ------------------------------------------------------------
consensus_7061#0 ATTTCTTTATGTTGATTTTGTGATTTTTTTTCTACTTTTATCGGAAGAACAAA 1008
consensus_7061#1 -----------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||