cluster # 7071

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Schistosoma mansoni
cluster # 7071 cluster # 7071 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7071#0 length = 550 sequences # 2

consensus_7071#1 length = 368 sequences # 2

consensusID : consensus_7071#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 550
fasta sequence

                              [CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGAGTTCAACCATATGCNTAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCGGACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCCCTGTACTTAT]

[+] EMBL AI976349             [CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGAGTTCAACCATATGCNTAGGACGATATTATAGAGTCGC                                                                                             ]
[+] EMBL CD167477             [                                                                                                                                                                                                                                                                                                  ACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTGTTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAA     AGTTCAACCATATGCTAAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCGGACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCCCTGTACTTAT]




>consensus_7071#0
CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAAT
CTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCT
ACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATG
GCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATAT
ATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCA
CCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTG
TTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGA
GTTCAACCATATGCNTAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCG
GACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCC
CTGTACTTAT

consensusID : consensus_7071#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence

                              [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAGTTGTTTGCTGTGAAACATTCGGGAA]

[+] EMBL CD136564             [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAGTTGTTTGCTGTGAAACATTCGGGAA]
[+] EMBL CD136557             [CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGGTAACCCTATGATATAAACTGTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAGGTTTTATGCATTTAGGCGGNTTACGTACTGCCTTATNTTACAGT                        ]




>consensus_7071#1
CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCCTATGATATAAACT
GTTACGTTATATATATAGCTGAACTAAGTAAATATATTTAAAAATCTACGATCGAGCTGC
TATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATGGCTTTAACATCGT
CACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATATATCATATTTTGTC
GAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCACCAAGTCCTACAG
GTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAGTTGTTTGCTGTGAAACA
TTCGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7071#0      CCGTTGTACATGTGCCAAGCTCTGCGTTTCTTATGTCCGACTGACTGTGACCAAAGCAAT 60
consensus_7071#1      ------CAAAGCAATCTAATACAGGTAGACTTATTTTGGACCAGCGNTAACCC------T 48
                             * *     * *   * *     ***** *  ***   *  * ***       *

consensus_7071#0      CTAATACAGGTAGACTTATTTTGGACCAGCGCTGAACTAAGTAAATATATTTAAAAATCT 120
consensus_7071#1      ATGATATAAACTGTTACGTTATATAT-ATAGCTGAACTAAGTAAATATATTTAAAAATCT 107
                       * *** *    *     ** *  *  *  ******************************

consensus_7071#0      ACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATG 180
consensus_7071#1      ACGATCGAGCTGCTATATACTAAATAACATCCTACTTTCATTTTTGTGTGCTGAGTTATG 167
                      ************************************************************

consensus_7071#0      GCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATAT 240
consensus_7071#1      GCTTTAACATCGTCACGAATACGATTATCACGCACCAATTACTTCCTGTGTCAAAAATAT 227
                      ************************************************************

consensus_7071#0      ATCATATTTTGTCAAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCA 300
consensus_7071#1      ATCATATTTTGTCGAAAGTGTAAATTGACGGAGATCAGTCCCATTCGTGTACGTTTCGCA 287
                      ************* **********************************************

consensus_7071#0      CCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACAAGTTG 360
consensus_7071#1      CCAAGTCCTACAGGTTTTATGCATTTAGGCGGTTTACGTACTGCCTTATTTAACA-GTTG 346
                      ******************************************************* ****

consensus_7071#0      TTTGCTGTGAAACATTCGGGAAAATTCATACTACGTATTGAAGATACGGATAAATCCAGA 420
consensus_7071#1      TTTGCTGTGAAACATTCGGGAA-------------------------------------- 368
                      **********************                                      

consensus_7071#0      GTTCAACCATATGCNTAGGACGATATTATAGAGTCGCTTCACTGGTCTGGACTAATTCCG 480
consensus_7071#1      ------------------------------------------------------------
                                                                                  

consensus_7071#0      GACGAAAGTCCAACCACTGGTGGAAATTATGGTTCGTACATTCAATCGGAAAGAAGACCC 540
consensus_7071#1      ------------------------------------------------------------
                                                                                  

consensus_7071#0      CTGTACTTAT 550
consensus_7071#1      ----------