cluster # 7081

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Schistosoma mansoni
cluster # 7081 cluster # 7081 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7081#0 length = 481 sequences # 3

consensus_7081#1 length = 410 sequences # 1

consensusID : consensus_7081#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 481
fasta sequence

                              [GTCTTTTCTAGAAGGACCCCCTNTCCGGTGGTCCTTATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA]

[+] EMBL CD062326             [GTCTTTTCTAGAAGGACCCCCTNTCCGGTGGTCCTTATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACGCAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTT ]
[-] EMBL CD062292             [                                             AATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAATCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA]
[-] EMBL CD062345             [                                               TCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAATAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACCAATAGTTGTTGTCCTTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCTACATGCTCTTCCGAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA]




>consensus_7081#0
GTCTTTTCTAGAAGGACCCCCTNTCCGGTGGTCCTTATCAATGATAATCGCGTTTGGGCT
TACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCA
ATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCT
AACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTC
ACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCA
AATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAAC
CACTACCAATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATC
ATTCGCTACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTT
A

consensusID : consensus_7081#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCTCGAATTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC]

[-] EMBL CD067634             [TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCTCGAATTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACCTAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC]




>consensus_7081#1
TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCT
CGAATTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACCTAAT
TAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGGGATG
CAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATCGCAT
AACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCATTAC
AGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAACTTAC
TTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7081#0      ---------------------------------------------------GTCTTTTCT 9
consensus_7081#1      TAGTCCTATTTCTGACTTGCCAGGTGGATGTAATTGCATCCCGTAGTTGATGTTCACTCT 60
                                                                         **    ***

consensus_7081#0      AGAAGGACCCCCTNTCCGGTGG--TCCTTATCAATGATAATCGCGTTTGGGCTTACTACC 67
consensus_7081#1      CGAA----TTCGAACCCGGTAGCGTCCTCATCAATGATAATCGCGTTTGGGCTTACTACC 116
                       ***      *    ***** *  **** *******************************

consensus_7081#0      TAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGG 127
consensus_7081#1      TAATTAGATAACGCGGTGCTAGTTACCGGGTTCGAGTCACGGAGTGGACATCAATTCTGG 176
                      ************************************************************

consensus_7081#0      GATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATC 187
consensus_7081#1      GATGCAAGAACATTAAGTCGACGAGTCCCGAATAGAACGAATAGGATGTGGCTAACTATC 236
                      ************************************************************

consensus_7081#0      GCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCA 247
consensus_7081#1      GCATAACCTCGGAAATAACAGAAAATAATTCTCTATGCGTTTCCTAATGGTTCACTGTCA 296
                      ************************************************************

consensus_7081#0      TTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAAC 307
consensus_7081#1      TTACAGTCTCAAATTAATTATATACACAAATTAGTTAGTAATAGTTAAAGGCAAATAAAC 356
                      ************************************************************

consensus_7081#0      TTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACCACTACC 367
consensus_7081#1      TTACTTTTACACCACAATGTGTCATACATAGCACGTTCAGTGATTTTTAAAACC------ 410
                      ******************************************************      

consensus_7081#0      AATAGTTGTTGTCCCTTCCAAACTGAAGTGTATTCATCACCACTCTCGAAATCATTCGCT 427
consensus_7081#1      ------------------------------------------------------------
                                                                                  

consensus_7081#0      ACATGCTCTTCCAAAAATGATAATAATCACATAAAACAAACATCCATACCCTTA 481
consensus_7081#1      ------------------------------------------------------