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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence
[GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA]
[+] EMBL CD080675 [GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCTTAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGCCACACAAAATCTTATCAATGAGTTACAGACAGTTGAACACTTAACAGATGACAGACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAATACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGATGATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAAGAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCAACTCCAGAAACGTTAAACAACCAGCTGGAAATCCAACCTTTAAATGATATGA]
[+] EMBL CD062332 [ ATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGTTGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAACTAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAACGTCATTATCTGATAAAGACATATGTGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGTACGC ]
consensusID : consensus_7088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 531 fasta sequence
[TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA]
[-] EMBL CD071444 [TGACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAGCAAACTACACAAGAAGAAGTAATGAATCTAACTGAACGAAGTGAACAGCTTCCCACCGATGAAAACGATATACCATTTGACTTTGTTGTACATGATATAAACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTT ]
[+] EMBL CD192407 [ AACGAGGAAGTAGGTGGAAATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAACACCTCTTGAGAAAGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAGTGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAATGTACCATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATTTCCCGCAGTAGAAGAACAGATAACTACAGAATATGAATCCCATCGTAAAGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7088#0 GAGGCCAGAATTCGGCACGAGGGAAAAAGACAACAGTGATCTCATAAATACACTTTCCCC 60
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 TGAATTGAATCATACGACAGAAGAACGAAATTATAGTACTGATTTTATTACAGATGTCCT 120
consensus_7088#1 ----------------------------------------------------------TG 2
consensus_7088#0 TAATAAAGATGATTATGACGATGGCAAAAACAAACTGTTTACTGAAGATCAAGATAATGT 180
consensus_7088#1 ACGTACACTTGACTGAGGGCAATGAAAGAGCAGAAAATTTATTTGAG--CAAACTACACA 60
** * *** * * * * ** * ** * **** * ** *** **
consensus_7088#0 TGAAAAAGAAGACCACTTACAGTGGTCCGTAAATGGTGACTCATTGTATATTCAACAAAC 240
consensus_7088#1 AGAAGAAGTAATGAATCTAA------CTGAACGAAGTGAACAGCTTCCCACCGATGAAAA 114
*** *** * * ** * * * **** * * * ***
consensus_7088#0 TAACTCTCCATCGATAAATGACGAAAAACATACTGAAATCGATGCGATAAACAACCGAAC 300
consensus_7088#1 CGATATACCAT---TTGACTTTGTTGTACATGATATAAACGAGG----AAGTAGGTGGAA 167
* **** * * * **** * ** *** * ** * * *
consensus_7088#0 GTCATTATCTGATAAAGACATATG-TGGAAAAAATGGTCTGGAAAGTGGTCCATTATTGT 359
consensus_7088#1 ATCTCGATAGAATTAGTACAGGTGGTGTTGAAGGCAATATTCAAA--CACCTCTTGAGAA 225
** ** ** * *** ** ** ** * * *** * **
consensus_7088#0 ACGCCACACAAAATCTTATCA--ATGAGTTACAGACAGTTGAACACTTAACAGATGACAG 417
consensus_7088#1 AGTCGAAACAAAATTTGAATACGATATATCTACATCAGTTGACCAACCAGAAAATGGAAG 285
* * * ******* * * * ** * ******* ** * * *** **
consensus_7088#0 ACCAGAACCGTTGAATATCTCTGTAGATATTCAAGGTGATGAATTATGTAACGCTGAAAT 477
consensus_7088#1 TGGCAAACAGTTACACACTCAAGTAGATCAGAATGAAGAGGAAATACACAA---TGTACC 342
*** *** * * ****** * * ** *** ** ** ** *
consensus_7088#0 ACATAAAAGGTCAACAGTGGAATGTTACGTAACAGAGCACTATTCCAATGATAATGA--T 535
consensus_7088#1 ATCTGAATCCCATACTGGGGCTTATATTTCATTTGCAGACTACTCAAAAGATGTCGAATT 402
* * ** ** * ** * * * * **** ** ** *** ** *
consensus_7088#0 GATAATAAACGCAGTATCAGTAATTATAAAGTAGAAAACATCTCACCCGAATATTTTGAA 595
consensus_7088#1 TCCCGCAGTAGAAGAACAGATAACTACAGAATATGA---ATCCCATCGTAAAGAAAAAGA 459
* * ** * *** ** * * ** * *** ** * ** *
consensus_7088#0 GAACATCAATCTTTAAGGAATGGAAATAAGGAAAATCAATCA-ACTCCAGAAACGTTAAA 654
consensus_7088#1 CAACAGTGATCTCATAAATACACTTTCCCCTGAATTGAATCATACGACAGAAGAACGAAA 519
**** **** * * ** * ***** ** ***** ***
consensus_7088#0 CAACCAGCTGGAAATCCAACCTTTAAATGATATGA 689
consensus_7088#1 TTATAGTACTGA----------------------- 531
* **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||