cluster # 7089

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Schistosoma mansoni
cluster # 7089 cluster # 7089 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7089#0 length = 567 sequences # 3

consensus_7089#1 length = 371 sequences # 1

consensusID : consensus_7089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 567
fasta sequence

                              [TAACCGACATAGACAATACCTGGCAAACATTACAGTTTCAAACTTGATGTCAATCAAAGATAGTATTTTGATCTATATCTATTAATTAATATGTTCAATGCAATATATCTATAATTCATAGTTTTTTGGTTGAATAAAGTAATTCATTTTATTCACTTATCTATCCATTTCATTACAAGTCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACCAAGTAGTCTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTACTGGTGGAT-TACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACAGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCACGTTATTATGAGACATCTACAAATGGTTCACTTTCACCAGCGTCTAGTCTATCATCTATGATATCGGCTACATGCGTTCCATCCCATTCAGTGACA]

[+] EMBL CD136666             [TAACCGACATAGACAATACCTGGCAAACATTACAGTTTCAAACTTGATGTCAATCAAAGATAGTATTTTGATCTATATCTATTAATTAATATGTTCAATGCAATATATCTATAATTCATAGTTTTTTGGTTGAATAAAGTAATTCATTTTATTCACTTATCTATCCATTTCATTACAAGTCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACCAAGTAGTCTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTACTGGTGGAT TACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACGGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCACGTTATTATGAGACATCTACAAATGGGTCACTTTCACCAGCGTCTA                                                  ]
[+] EMBL CD179078             [                                                                                                                                         AGCAATTCATTTTATTCACTTATCTATCCATTTCATTATAAGTTACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACCAAGTAGTTTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTACTGGTGGATATACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACAGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCATGTTATTATGAGACATCTACAAATGGTTCACTTTCACCAGCGTCTAGTCTATCATCTATGATAT                                ]
[+] EMBL CD181532             [                                                                                                                                                                                                                                                                                                                                                                                                                             ATGAGACATCATTTACAGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCAGGTTATTATGAGACATCTACAAATGGTTCACTTTCACCAGCGTCTAGTCTATCATCTATGATATCGGCTACATGCGTTCCATCCCATTCAGTGACA]




>consensus_7089#0
TAACCGACATAGACAATACCTGGCAAACATTACAGTTTCAAACTTGATGTCAATCAAAGA
TAGTATTTTGATCTATATCTATTAATTAATATGTTCAATGCAATATATCTATAATTCATA
GTTTTTTGGTTGAATAAAGTAATTCATTTTATTCACTTATCTATCCATTTCATTACAAGT
CACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAA
TCTAACTGAACCAAGTAGTCTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGT
TGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTA
CGGTCCTAGTACTGGTGGATTACATCATCATTAAATAATACTACTAGTCATGATGAGACA
TCATTTACAGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCACGTTATTAT
GAGACATCTACAAATGGTTCACTTTCACCAGCGTCTAGTCTATCATCTATGATATCGGCT
ACATGCGTTCCATCCCATTCAGTGACA

consensusID : consensus_7089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 371
fasta sequence

                              [ATTAAATAAAACTAATGGATTTAATCATTTAGACAATGAAAATAATAATGATAATAATAAACGAATAACAATTAGTAGACCAGTTTTATTAAGTCGACCAAATTCAATCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACCAAGTAGTTTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTACTGGTGGATATACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACAGAACAACAGCAAA]

[-] EMBL CD159970             [ATTAAATAAAACTAATGGATTTAATCATTTAGACAATGAAAATAATAATGATAATAATAAACGAATAACAATTAGTAGACCAGTTTTATTAAGTCGACCAAATTCAATCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACCAAGTAGTTTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTACTGGTGGATATACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACAGAACAACAGCAAA]




>consensus_7089#1
ATTAAATAAAACTAATGGATTTAATCATTTAGACAATGAAAATAATAATGATAATAATAA
ACGAATAACAATTAGTAGACCAGTTTTATTAAGTCGACCAAATTCAATCACACATACAAC
TTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTAATCTAACTGAACC
AAGTAGTTTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTGTTGTTTCATCATC
ATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCTACGGTCCTAGTAC
TGGTGGATATACATCATCATTAAATAATACTACTAGTCATGATGAGACATCATTTACAGA
ACAACAGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7089#0      TAACCGACATAGACAATACCTGGCAAACATTACAGTTTCAAACTTGATGTCAATCAAAGA 60
consensus_7089#1      ------------------------------------------------------------
                                                                                  

consensus_7089#0      TAGTATTTTGATCTATATCTATTAATTAATATGTTCAATGCAATATATCTATAATTCATA 120
consensus_7089#1      -ATTAAATAAAACTA-ATGGATTTAATCATTTAGACAATG-AAAATAATAATGATA-ATA 56
                       * **  *  * *** **  *** * * ** *   ***** ** ***   ** **  ***

consensus_7089#0      GTTTTTTGGTTGAATAAAGTAATTCA-TTTTATTCACTTATCTATCCATTTCATTACAAG 179
consensus_7089#1      ATAAACGAATAACAATTAGTAGACCAGTTTTATTAA---GTCGACCAAATTCA------A 107
                       *       *   *   ****   ** ******* *    ** * * * ****       

consensus_7089#0      TCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTA 239
consensus_7089#1      TCACACATACAACTTTAAATCGTCTACCATCCAATTCATCATCATCTTCAATTATTGGTA 167
                      ************************************************************

consensus_7089#0      ATCTAACTGAACCAAGTAGTCTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTG 299
consensus_7089#1      ATCTAACTGAACCAAGTAGTTTAGGCAGTTCAACAACAAGTCGTGACAGTTCATTAACTG 227
                      ******************** ***************************************

consensus_7089#0      TTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCT 359
consensus_7089#1      TTGTTTCATCATCATACAACGGTTGCAGTAGTAGTAGTGGTGGTGGTGTTGGTATCGGCT 287
                      ************************************************************

consensus_7089#0      ACGGTCCTAGTACTGGTGGAT-TACATCATCATTAAATAATACTACTAGTCATGATGAGA 418
consensus_7089#1      ACGGTCCTAGTACTGGTGGATATACATCATCATTAAATAATACTACTAGTCATGATGAGA 347
                      ********************* **************************************

consensus_7089#0      CATCATTTACAGAACAACAGCAAACTCAACATCAGCCTTCAATATCATCATCACGTTATT 478
consensus_7089#1      CATCATTTACAGAACAACAGCAAA------------------------------------ 371
                      ************************                                    

consensus_7089#0      ATGAGACATCTACAAATGGTTCACTTTCACCAGCGTCTAGTCTATCATCTATGATATCGG 538
consensus_7089#1      ------------------------------------------------------------
                                                                                  

consensus_7089#0      CTACATGCGTTCCATCCCATTCAGTGACA 567
consensus_7089#1      -----------------------------