cluster # 7091

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Schistosoma mansoni
cluster # 7091 cluster # 7091 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7091#0 length = 386 sequences # 2

consensus_7091#1 length = 369 sequences # 1
consensus_7091#2 length = 329 sequences # 1

consensusID : consensus_7091#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 386
fasta sequence

                              [AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATAACCACAGTTTGACCTGCGGTCATCTTCCTGTTGGTAGCAGTTGGCTCTATT]

[-] EMBL CD164031             [AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATT                                                                                                                                                                            ]
[+] EMBL CD062380             [              ACGAGTATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATAACCACAGTTTGACCTGCGGTCATCTTCCTGTTGGTAGCAGTTGGCTCTATT]




>consensus_7091#0
AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGT
ACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGC
TGTTGGGACGAAGTCTGGGTTCATCCGAATTTTCGGAAAACCAGGTGTAGACTGCAGCAT
CTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTT
GGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGA
AATTGTTCACTCGTTACAGTTCAAACGTGAACATAACCACAGTTTGACCTGCGGTCATCT
TCCTGTTGGTAGCAGTTGGCTCTATT

consensusID : consensus_7091#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATTTGACCTGCGGTCATCTT]

[-] EMBL CD177951             [TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATTTGACCTGCGGTCATCTT]




>consensus_7091#1
TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGTACAAGGTTTTCCCTATCAA
CCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGCTGTTGGGACGAAGTCTGGG
TTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCA
GGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGTCCTTCAAATTTTCTTTCTC
GTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATA
CGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATTTGACCTGC
GGTCATCTT

consensusID : consensus_7091#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATGCTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCCAGTCACCTTTCCTCACGTGGTTGGACCTCAATG]

[+] EMBL CD190138             [TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGTCCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACGTGAACATGCTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCCAGTCACCTTTCCTCACGTGGTTGGACCTCAATG]




>consensus_7091#2
TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTGGGA
TAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGTCCT
TCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGTTGC
ACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAAACG
TGAACATGCTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCCAGTC
ACCTTTCCTCACGTGGTTGGACCTCAATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7091#0      AGCCATTGAGATCGACGAGTATATGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGT 60
consensus_7091#1      -------------------TATTTGAAGAGTGAACATTTTCAAGTTGGGAAGATTTCTGT 41
consensus_7091#2      ------------------------------------------------------------
                                                                                  

consensus_7091#0      ACACGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGC 120
consensus_7091#1      ACAAGGTTTTCCCTATCAACCGACTTGCATCGCTTTTGATCCCGTTCAACGGATTGTTGC 101
consensus_7091#2      ------------------------------------------------------------
                                                                                  

consensus_7091#0      TGTTGGGACGAAGTCTGGGTTCATCCGAAT------------------------------ 150
consensus_7091#1      TGTTGGGACGAAGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTG 161
consensus_7091#2      ---TGGGAGGAGGTCTGGGTTCATCCGAATGTAAGTTACTCACATATTTTTACAGGCTTG 57
                         ***** ** ******************                              

consensus_7091#0      ------TTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGT 204
consensus_7091#1      GGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTTCAGCATCTGCTGT 221
consensus_7091#2      GGATAGTTTCGGAAAACCAGGTGTAGACTGCAGCATCTGTCATCCTCCAGCATCTGCTGT 117
                            **************************************** *************

consensus_7091#0      CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 264
consensus_7091#1      CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 281
consensus_7091#2      CCTTCAAATTTTCTTTCTCGTCAACGAGGGTGGGTTGGTCTCCATTTGTGGTGACGACGT 177
                      ************************************************************

consensus_7091#0      TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 324
consensus_7091#1      TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 341
consensus_7091#2      TGCACACTTGTGGAACATACGCCAAAAGAATCCGGAAATTGTTCACTCGTTACAGTTCAA 237
                      ************************************************************

consensus_7091#0      ACGTGAACATAACCACAGTTTGACCTGCGGTCATCT-TCCTGTTGGTAGCAGTTGGCTCT 383
consensus_7091#1      ACGTGAACAT---------TTGACCTGCGGTCATCT-T---------------------- 369
consensus_7091#2      ACGTGAACATG-CTATTCCCCATACTGCGAGAATCAGTGCTCTTGATTTCATCACAATCC 296
                      **********              *****   ***  *                      

consensus_7091#0      ATT------------------------------ 386
consensus_7091#1      ---------------------------------
consensus_7091#2      AGTCACCTTTCCTCACGTGGTTGGACCTCAATG 329