These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 421 fasta sequence [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT] [+] EMBL CD111070 [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGCTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT] [+] EMBL CD111002 [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTATT] [+] EMBL CD098399 [AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAACTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAATGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAATACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACACGGCAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCCTGTGTTATT] consensusID : consensus_7104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAATGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAATACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATTGATCAGTTACAATGCTGGTTTCCTTTAGGGTT] [+] EMBL CD111612 [AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAGGAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAGCGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGTCGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAATGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAATACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATTGATCAGTTACAATGCTGGTTTCCTTTAGGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7104#0 AAAGTCACGTTCGATATTTTATTAACAGGAATACATCAGGTAATACGTAAACAAGCGTAG 60 consensus_7104#1 -AAGTCACGTTCGATATTTTATTAACAGGAATACATTAGGTAATACGTAAACAAGCGTAG 59 *********************************** *********************** consensus_7104#0 GAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAG 120 consensus_7104#1 GAATGCACATAGTTGCACAAAGAAATCGTTCAACTTATTGAAATGAGTAATGCAATCGAG 119 ************************************************************ consensus_7104#0 CGGTTTTCTAATGAATTACAAAATAGAAACATCTTGACCACAATAATAATAAGAACAAGT 180 consensus_7104#1 CGGTTTTCTAATGAATTACAAAATAGAAACACCTTGACCACAATAATAATAAGAACAAGT 179 ******************************* **************************** consensus_7104#0 CGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATACACAACCATCTCCAAA 240 consensus_7104#1 CGTAAGATCTTTCTGAGAATTATAAATTCCTTTTCTTTTTCATATACAACCATCTCCAAA 239 ******************************************** *************** consensus_7104#0 TGACACAACCGATACATAAAACAAAGAAGGAAACGACCAGCGGTATCACAACATATAAAT 300 consensus_7104#1 TGACACAACCGATACATAAAGCAAAGAAGGAAACGACCAGCGGTATCACAATGTATAAAT 299 ******************** ****************************** ******* consensus_7104#0 ACTGGAGTGATTTGTTCTGTCCGTTTTCTTCGGTTATTCCGGCGGTCGTATGCTTAACAC 360 consensus_7104#1 ACTGGAGTGATTTGTTCTGTCCGTTCTCTTCGGTTATTCCGTCGGTCGTATGCATGTATT 359 ************************* *************** *********** * consensus_7104#0 GG-CAATTATTTTCTTTCAAGTATTCAGTATCCTGATAATAAATATCAATGCATGTGTTA 419 consensus_7104#1 GATCAGTTACAATGCTGGTTTCCTTTAGGGTT---------------------------- 391 * ** *** * * ** ** * consensus_7104#0 TT 421 consensus_7104#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||