These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 438 fasta sequence [TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGGACTGAGTC] [+] EMBL CD098415 [TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGGACTGAGTC] [-] EMBL CD111403 [ AAACTATCCAAAGCCCTCATGAATTCGCCTGGATAACGGTAGGCCAGTAATTTGGTTAAACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAATACTCGACCAGGG ] [-] EMBL CD164060 [ TGAACCCAAAACGGTAGTATGTTTTGTCCTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCCCAGTGAACTGAACTAAACCAGCCTCCATAGTACGATTCAGATCAACAAAATTTCGGCTAACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCC ] consensusID : consensus_7108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [CTGAACCCATATCGGTATTATGTTTTGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCTCTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTAACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG] [+] EMBL CD163806 [CTGAACCCATATCGGTATTATGTTTTGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCTCTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTAACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAAATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGAGCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7108#0 TAAACTGTCCAAAGCCCTCATGAATTCCCCTGGATAACGGTAGGCCAGTAATTTGGTTAA 60 consensus_7108#1 ------------------------------------------------------------ consensus_7108#0 ACTCCTCAAACAAGCTAGACACTGACGTGAAAATCCTGAACCCAAAACGGTAGTATGTTT 120 consensus_7108#1 -----------------------------------CTGAACCCATATCGGTATTATGTTT 25 ********* * ***** ******* consensus_7108#0 TGTC-CTCAGGGAACCATCCATCTTGCCACTTTTCAAATTATAGAATGAAATTAGCTTCC 179 consensus_7108#1 TGGAACTCATGGATCCATACATCTTGCCAGTTTTCAAATTATATAATGAAAGTACCTTCT 85 ** **** *** **** ********** ************* ******* ** **** consensus_7108#0 CAGTGAACTGAACTAAACCAGCCTCCATAGTACG-ATTCAGATCAACAAAATTTCGGCTA 238 consensus_7108#1 CTGCGAACTGAACTAAACCAGGCTACATATGACACATTCAGATCAACAAAATTTCGGCTA 145 * * ***************** ** **** ** ************************* consensus_7108#0 ACTAAATGTTTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAA 298 consensus_7108#1 ACTAAATGATTGTGCGACTTGAGGAAGGATTTGTAATTCATTTTAGTAAAATCAATTAAA 205 ******** *************************************************** consensus_7108#0 ATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTAGCAGATAATAAGTCGAGA 358 consensus_7108#1 ATTGGAACTGGTTGAACATTTGCAGTTAAACTTGTTAATTTATCAGATAATAAGTCGAGA 265 ****************************************** ***************** consensus_7108#0 GCTTTACGACGAAGCCCACGGTTTTCACAGGAGAATAAATCCAAGATCATGGAGATGAAT 418 consensus_7108#1 GCTTTACGACGAAGCCCACGGTTTTCACAGGATAATAAATCCAAGATCATGGTCAGTCG- 324 ******************************** ******************* * consensus_7108#0 ACTCGACCAGGGACTGAGTC 438 consensus_7108#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||