cluster # 7110

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Schistosoma mansoni
cluster # 7110 cluster # 7110 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7110#0 length = 584 sequences # 3

consensus_7110#1 length = 424 sequences # 1

consensusID : consensus_7110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 584
fasta sequence

                              [CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGAACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGTACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAGTGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC]

[+] EMBL CD122774             [CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTACCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAG                                                                                                                                                                                           ]
[-] EMBL CD122705             [ TAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCTTGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGC                                                                                                                                                                                          ]
[+] EMBL CD115484             [                                                                                                                                            TGACTCACTTGATTGT CAGCATCTGAATTTGAGTGGACGTTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGAACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGTACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAGTGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC]




>consensus_7110#0
CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCT
TGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGT
GTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACG
TTTTTCATAGCTGTCTGATTGTTTATGATGCATGTATTAGCTAACGAAGTTGAGCCTGCT
GAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGATTG
ATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGACAGCAAGCAAAACTTGTGAACA
TAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGAACTC
ATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGTACTT
GACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAGTGGT
TGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC

consensusID : consensus_7110#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [GGACGTTCTTCAATACTCGATACTTATAGATTCAAAGCTAGGACACATCCACGGGATGTCCCGATCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAATTGTTTTAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTTTGAAGAAGTGTTTAGTGCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAAACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTCATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATAGTACAGCATCTGAATTTGAGTGGACGTTTTTC]

[+] EMBL CD062472             [GGACGTTCTTCAATACTCGATACTTATAGATTCAAAGCTAGGACACATCCACGGGATGTCCCGATCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAATTGTTTTAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTTTGAAGAAGTGTTTAGTGCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAAACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTCATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCACTTGATAGTACAGCATCTGAATTTGAGTGGACGTTTTTC]




>consensus_7110#1
GGACGTTCTTCAATACTCGATACTTATAGATTCAAAGCTAGGACACATCCACGGGATGTC
CCGATCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAAT
AAAATTGTTTTAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAA
CTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTTTGAAGAAGTGTTTAGTGCA
TTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAAACCACTTGG
GACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTCATACATAGCGTGT
TGTATAGCCGGTACTAGATGACTCACTTGATAGTACAGCATCTGAATTTGAGTGGACGTT
TTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7110#0      CTAGAACTTGCGGTTAAACTTCCCGGATGTGAAAACTGTGAAAGGTCGGAACACTTTTCT 60
consensus_7110#1      --------------------------------------------------GGACGTTCTT 10
                                                                          ** **  *

consensus_7110#0      TGGGACTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTGTTAATACATAGCGT 120
consensus_7110#1      CAATACTCGATACTTATAGATTCA------AAGCTAGGACACATCCACGGGATGTCCCGA 64
                          *** *  ** * *  *****      *   * * *    *       *  *  ** 

consensus_7110#0      GTTGTATAGCCGGTACTAGATGACTCACTTGATTGTACAGCATCTGAATTTGAGTGGACG 180
consensus_7110#1      TCCAGAGATTTGGCACAAAATGTAAATCTTGTCTGGGAGATATCCATTCACTAAATAAAA 124
                           * *   ** ** * ***     ****  **      ***        *    *  

consensus_7110#0      TTTTTCATAGCTGTCTGATTGTTTATGATGC---ATGTATTAGCTAACGAAGTTGAGCCT 237
consensus_7110#1      TTGTTT-TAATTGTCTCACAGTTTAGGTTGTCTAATGAGCTAGCACTTGCGGTTAAACTT 183
                      ** **  **  ***** *  ***** * **    ***   ****    *  *** * * *

consensus_7110#0      GCTGAACTATTATTCTGATCACAGAACTTCACTTCACCTGAAGCAGACGACCCAGTTAGA 297
consensus_7110#1      CCCGGA----TGTGAAAACTGTGAAAGGTCGGAACACTTT--TTTGAAGAAGTGTTTAGT 237
                       * * *    * *    *      **  **    *** *      ** **     **** 

consensus_7110#0      TTGATAGGACCGCGACTTAATAGGTCAGAAGACGAAATAGA-CAGCAAGCAAAACTTGTG 356
consensus_7110#1      GCATTAGACGTTAGTCCTTGTAGACGAGATGGTTGATTAGTTCGACAGGCCAAA------ 291
                          ***      * * *  ***   *** *    * ***  *  ** ** ***      

consensus_7110#0      AACATAATCCACAACAGCGATGCCGAATTCACTTCCAATAGCCATTAAACCAAAAGCTGA 416
consensus_7110#1      ACCACTTGGGACCTTGGCACGTTTCAATTCACTCTTGACAGTTGTAGCTCTTG----TTC 347
                      * **      **    **       ********    * **   *    *       *  

consensus_7110#0      ACTCATACTGATAGCTGTAATAGATGGCGGAGGGATAAGACAGGAAGCTGTAGGATCAGT 476
consensus_7110#1      ATACATAGCGTGTTGTATAGCCGGTACTAGATGACTCA--CTTGATAGTACAGCATCTGA 405
                      *  ****  *     * **   * *    ** *  * *  *  **   *  ** *** * 

consensus_7110#0      ACTTGACTTTAGATTTGATTCAAAGCTTAGTCCAAGTATGCCTACACGACAAACAAGAAG 536
consensus_7110#1      ATTTGAGTGGACGTTT--TTC--------------------------------------- 424
                      * **** *  *  ***  ***                                       

consensus_7110#0      TGGTTGATAGCCTGGAGGCCAATGATGGCTACCTTGACGTACTGGAAC 584
consensus_7110#1      ------------------------------------------------