cluster # 7116

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7116 cluster # 7116 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7116#0 length = 503 sequences # 3

consensus_7116#1 length = 295 sequences # 1

consensusID : consensus_7116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 503
fasta sequence

                              [TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGATATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAATCTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTAGTTGGTGCCATAATCTATCACCGG]

[-] EMBL CD134311             [TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCAT                                                                                                                                                                                                         ]
[-] EMBL CD134341             [                           AACTGTCATTCGTTGTTTTGGATCAGAATGTAGTAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGGTTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTCTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGG TTATCAACAGTAAGTGCAT                                                                                                                                                                                                         ]
[+] EMBL CD180969             [                                                                                                                                                           GGTAAAGTAACAAACCTAATGACCACATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGGATTAGTTAATTCTGGTGGAATATATACCATATAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGCATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGATATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAATCTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTAGTTGGTGCCATAATCTATCACCGG]




>consensus_7116#0
TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAG
TAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGG
TTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCA
CATATCAGCAGATTGACCAACTCGTGCCGATTTACTAATTGGCATAGCATTAGTTAATTC
TGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTGC
ATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGAT
ATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAATC
TAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTAG
TTGGTGCCATAATCTATCACCGG

consensusID : consensus_7116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 295
fasta sequence

                              [TACAGTAACTGAGCATAAAGCAGCGGATATATTACGTCAGTTATTAGATTTAACTGCACAAATACACAAAAGTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTGTTAATTTATGCAGTAAATTGGGCGAGACTATAATTTATGGATGGACCAATCAGATTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAATACTATTTCGGCATTATGACTGATATCAGTTCGTGATGAAAACATTAAATATAATCTCTAACCCTAACATTCAACTGT]

[+] EMBL CD110849             [TACAGTAACTGAGCATAAAGCAGCGGATATATTACGTCAGTTATTAGATTTAACTGCACAAATACACAAAAGTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTGTTAATTTATGCAGTAAATTGGGCGAGACTATAATTTATGGATGGACCAATCAGATTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAATACTATTTCGGCATTATGACTGATATCAGTTCGTGATGAAAACATTAAATATAATCTCTAACCCTAACATTCAACTGT]




>consensus_7116#1
TACAGTAACTGAGCATAAAGCAGCGGATATATTACGTCAGTTATTAGATTTAACTGCACA
AATACACAAAAGTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTGTTAATTTATGCAG
TAAATTGGGCGAGACTATAATTTATGGATGGACCAATCAGATTTAAAATAGTAGGTCTTA
TGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAATACTATTTCGGCATTATGACTGA
TATCAGTTCGTGATGAAAACATTAAATATAATCTCTAACCCTAACATTCAACTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7116#0      TATCCATGGATGTTCTAAAGCTTGATGAACTGTCATTCGTTGTTTTGGATCAGAATGTAG 60
consensus_7116#1      ------------------------------------------------------------
                                                                                  

consensus_7116#0      TAAACGTTTAGTAAAATCAATCATTTTTGGTGAATAATGCATCTTTTCAAGTTTTTCTGG 120
consensus_7116#1      ------------------------------------------------------------
                                                                                  

consensus_7116#0      TTCAGGTGATCCTTCTGTATCACCAGTAGTCATTTGGTAAAGTAACAAACCTAATGACCA 180
consensus_7116#1      ------------------------------------------------------------
                                                                                  

consensus_7116#0      CATATCAGCAGATTGACCAACTCGTGCCGATTTACTAAT-TGGCATAGCATTAGTTAATT 239
consensus_7116#1      --------TACAGTAACTGA---GCATAAAGCAGCGGATATATTACGTCAGTTATTAGAT 49
                               * * * **  *   *     *    *  ** *   *   ** *  ***  *

consensus_7116#0      CTGGTGGAATATATACCATAGAACAAAATGATAAACGAACAGGTTTATCAACAGTTGGTG 299
consensus_7116#1      TTAACTGCACAAATAC-ACAAAA-GTGATGGTGTACATCTTGGTTTACAAGTAAGTGTTG 107
                       *    * * * **** * * **    *** *  **     ******  *  *  ** **

consensus_7116#0      CATGCATTTGTCCTAGATCAGCCAGTGCAATACGTTGCCTAGATTGATCAGTAAAGAGGA 359
consensus_7116#1      TTAATTTATGCAGTAAATTGGGCGAGACTATAATTTA--TGGATGGACCAATCAGA---- 161
                            * **   ** **  * *    * ***  **   * *** ** ** * *      

consensus_7116#0      TATTCTCTGGTTGTAAACCAAGATGTACACCACCACTTTTGTGTATTTGTGCAGTTAAAT 419
consensus_7116#1      ---TTTAAAATAGTAGGTCTTATGTTTTGGCACGAGATTCATCCACTCATTTGGCTAAAT 218
                         * *    * ***   *      *    *** *  **  *  * *  *   * *****

consensus_7116#0      CTAATAACTGACGTAATATATCCGCTGCTTTATGCTCAGTTACTGTAATACGTCGACCTA 479
consensus_7116#1      ------ACTATTTCGGCATTATGACTGATATCAGTTC-GTGATGAAAACAT-TAAATATA 270
                            ***        **     *** * *  * ** ** *    ** *  *  *  **

consensus_7116#0      GTTGGTG-CCATAATCTATCACCGG 503
consensus_7116#1      ATCTCTAACCCTAACATTCAACTGT 295
                       *   *  ** ***  *   ** *