cluster # 7119

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Schistosoma mansoni
cluster # 7119 cluster # 7119 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7119#0 length = 641 sequences # 2

consensus_7119#1 length = 335 sequences # 2

consensusID : consensus_7119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 641
fasta sequence

                              [GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTGTTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTATTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC]

[+] EMBL CD129533             [GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTGTTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTATTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACA                                  ]
[+] EMBL CD187204             [                                                                                                                                                                                                                                                          TTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACTTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC]




>consensus_7119#0
GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTG
TTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTA
TTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCA
CGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACT
GTCATGATAGTTTTGCTCGATAATGAGGTATTACATGCTGATGAGCTGGAATTTGACACT
TCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTTTGGATTG
TTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTATGGGCAGTTGCGTCTCATAACCT
GAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAATGGTTTCCGG
TTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATCGCTTCCAAT
GTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGCGAAACGTGC
CTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC

consensusID : consensus_7119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 335
fasta sequence

                              [ATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA]

[+] EMBL CD110922             [ATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA]
[+] EMBL CD111046             [ TGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACGACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAATAGCTGGATTTTAATA]




>consensus_7119#1
ATGGGGCATAGAAGCATATGCACGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGT
TTCGGGTGTTGAATTGGTTACTGTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGAT
GAAAATATTGTAAGACATAACAAAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGA
CTACCAACCACAGTAACGCATCGTTTCGATAATAACACGATTTCACCTCAGTTAAGAACG
ACTAATTTATTTATAACATGAGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAA
AGACAAGAATCTAATACAATAGCTGGATTTTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7119#0      GATGATGACGATGATAATACTGAGTGCGAATTGATTGGTTTATAATCTCCCATTAATTTG 60
consensus_7119#1      ------------------------------------------------------------
                                                                                  

consensus_7119#0      TTCAAACTATATGCATTTGTACTAGTGACTGACTCCGTTCGAGGGGATGATTGTAAATTA 120
consensus_7119#1      ------------------------------------------------------------
                                                                                  

consensus_7119#0      TTACTTGGCTCACAACCGTAATAAATAGGTAACATGGCATGGGGCATAGAAGCATATGCA 180
consensus_7119#1      --------------------------------------ATGGGGCATAGAAGCATATGCA 22
                                                            **********************

consensus_7119#0      CGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACT 240
consensus_7119#1      CGAGGCACTGAAGTATGAAACGATCTATTGTTCTGTGTTTCGGGTGTTGAATTGGTTACT 82
                      ************************************************************

consensus_7119#0      GTCATGATAGTTTTGCTCGA--TAATGAGGTATTACATGCTGATGAGCTGGAATTTGACA 298
consensus_7119#1      GTCATGATAGTTTTGCTGGAACCAAAATGGAAAATGATGAAAATATTGTAAGACATAACA 142
                      ***************** **   **   ** *    ***   **    *   *  * ***

consensus_7119#0      C-----TTCAGCCGGAAATACACCACGGTCCGAAATAGATTCAACACTTTTCTTAGACTT 353
consensus_7119#1      AAAGTATTTGGTTAGAGTAGCAACACTAATCGGAACGACTACCA-ACCACAGTAACGCAT 201
                            **  *   **    ** ***    ** **    * * * **     * *  * *

consensus_7119#0      TGGATTGTTAGAGTCAAGAAAAGCAGCTCCTATATGATAGTCTA--TGGGCAGTTGCGTC 411
consensus_7119#1      CGTTTCGATAATAACACGATTT-CACCTCAGTTAAGAACGACTAATTTATTTATAACATG 260
                       *  * * **    ** **    ** ***   ** **  * ***  *      *  * * 

consensus_7119#0      TCATAACCTGAAAGGCTACTACTTCGCGTAGAGCCACCAGTCTCCAAAACGTCCCACAAT 471
consensus_7119#1      AGATAGTACTAAGTAACTGTGATGGATGCATTGATGCGAAAGACAAGAATCTAATACAAT 320
                        ***     **       *  *    * *  *   * *    * * **  *   *****

consensus_7119#0      GGTTTCCGGTTATTATGTAGTGGTTTTTCCTTCACATCAGACGGATTAATCGCCGGAATC 531
consensus_7119#1      AGCTGGATTTTAATA--------------------------------------------- 335
                       * *     *** **                                             

consensus_7119#0      GCTTCCAATGTTTTGGGCTCGCTTGTAGAACATTGACTACGGTTAGAATGCTTTGAATGC 591
consensus_7119#1      ------------------------------------------------------------
                                                                                  

consensus_7119#0      GAAACGTGCCTAAACAAACTTCTCAGTCCTTTTTTCTTCGACGACTTTCC 641
consensus_7119#1      --------------------------------------------------